current user: public
If you have questions about the server, please let us know.

Query: [S] COG2911 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .  860    .  870    .  880    .  890    .  900    .  910    .  920    .  930    .  940    .  950    .  960    .  970    .  980    .  990    . 1000    . 1010    . 1020    . 1030    . 1040    . 1050    . 1060    . 1070    . 1080    . 1090    . 1100    . 1110    . 1120    . 1130    . 1140    . 1150    . 1160    . 1170    . 1180    . 1190    . 1200    . 1210    . 1220    . 1230    . 1240    . 1250    . 1260    . 1270    . 1280    . 1290    . 1300    .
# Score Template Links and tools%idFirst MKWVKRLSIAFLLIILLLVGALGGLLGTTSGLHFLINSAARWVPGLDIASVSGGWRGLTLTGIQYQMPGVTVKAGQFYLSLQLSCLKNSELCVNALTAQDIDVVVNTQAMPPTSSTPASTDPMGELSTPYPIFLRLLSLNNVKVTIDDTAISLDEFRTGAHWKQRSLALMPTKINGLLIALPKTVSAGVPDAVKPAVETAMAAKEAVAQLSAAPGRSATASGQSTTASGRSATASGQSATTGGQLATVPAEPATPLGESLKALFAKPLLPALPDFRLPLDLQIEEISGQQLRLTGDNEVLISSLLLQASTQDQRITLDTLEIKSPQGGLSAQGQATLADKWPLDLVVNSALNIDSLKGEKVKLTVGGALREELKVTLNLSGPVSAQLETETSLAKAGLPLSLTLQSKQLRWPLTGEPQYQMNNLRMRLNGQATDYALSIRSDIKGTDLPPAVFTLEGKGNVEQFNLTRLRLAALQGHTDLTGVVDWRQAISWNSVLTLSGINMAKQWPEWPAKLEGKIVTRGSIHGGSWQLQVPELVLDGNVKQNRVTARGSLTGNAAGQWHIPGINLALGRNKLDMKGELNDNWLLDANVDAPQLDGALPGLGGVVKGSLKLRGNLKTPQLLADLTANRLQWQELHINRIKVDGDVRSTDQIQGQLAVRVEQLKQADFVVSLLTLDARGSEKQHQLRLNMQGDPVSGQLSLEGSFDKQQQRWRGTLNNTRFDTPVGEWRLSRAMTLDYQNSAQRITIGPHCWLNPNAELCAPRPIEAGPSGQASVVLNRFDLAMIKPFLGPDTTMNGVFTGRAEVSWKEGGKLPDVRVSLSGNGVKVQQMVQGSPLPIAFETLNLNGGLANGQVRADWLVKLVNNGQFSGQVQVADPEGRRNLSGNVAISNLSLAMINPILSDGEKAAGILNANLRLAGNAKSPLVYGRLALDKVDIDGSWMPFDITEGRLAMNFDGMTSTLEGLIRTSQGQLNLSGDADWRDISAWHARIAAKGNKLRVTIPPTARVDVSPDIVFEATPQLFTLNGSVDIPWARITVQEVPETAVGVSSNEVMLNDQLQPIAPRSASIPISSNLVIRIGNDVRLNAFGLKARLQGDLRMMQDQRGLGLNGQINIPSGSFRAYGQDLIVNKGILLFSGPPDQPLLNIEAIRNPDSTANGVIAGVRVTGMADSPRMEVFSDPAMSQQEALSYLLRGQGLGNSGADSSMMTSMLIGMGVAQSGKLVGKIGEAFGVSNLALDTQGVGDSSQVVVSGYVTKDLQIKYGVGIFDSLATLTLRYRLMPRLYLEAVSGIDQALDLLYQFEFLast
1 -182.000[S] COG2911 Uncharacterized protein conserved in bacteria  ali  100  1MKWVKRLSIAFLLIILLLVGALGGLLGTTSGLHFLINSAARWVPGLDIASVSGGWRGLTLTGIQYQMPGVTVKAGQFYLSLQLSCLKNSELCVNALTAQDIDVVVNTQAMPPTSSTPASTDPMGELSTPYPIFLRLLSLNNVKVTIDDTAISLDEFRTGAHWKQRSLALMPTKINGLLIALPKTVSAGVPDAVKPAVETAMAAKEAVAQLSAAPGRSATASGQSTTASGRSATASGQSATTGGQLATVPAEPATPLGESLKALFAKPLLPALPDFRLPLDLQIEEISGQQLRLTGDNEVLISSLLLQASTQDQRITLDTLEIKSPQGGLSAQGQATLADKWPLDLVVNSALNIDSLKGEKVKLTVGGALREELKVTLNLSGPVSAQLETETSLAKAGLPLSLTLQSKQLRWPLTGEPQYQMNNLRMRLNGQATDYALSIRSDIKGTDLPPAVFTLEGKGNVEQFNLTRLRLAALQGHTDLTGVVDWRQAISWNSVLTLSGINMAKQWPEWPAKLEGKIVTRGSIHGGSWQLQVPELVLDGNVKQNRVTARGSLTGNAAGQWHIPGINLALGRNKLDMKGELNDNWLLDANVDAPQLDGALPGLGGVVKGSLKLRGNLKTPQLLADLTANRLQWQELHINRIKVDGDVRSTDQIQGQLAVRVEQLKQADFVVSLLTLDARGSEKQHQLRLNMQGDPVSGQLSLEGSFDKQQQRWRGTLNNTRFDTPVGEWRLSRAMTLDYQNSAQRITIGPHCWLNPNAELCAPRPIEAGPSGQASVVLNRFDLAMIKPFLGPDTTMNGVFTGRAEVSWKEGGKLPDVRVSLSGNGVKVQQMVQGSPLPIAFETLNLNGGLANGQVRADWLVKLVNNGQFSGQVQVADPEGRRNLSGNVAISNLSLAMINPILSDGEKAAGILNANLRLAGNAKSPLVYGRLALDKVDIDGSWMPFDITEGRLAMNFDGMTSTLEGLIRTSQGQLNLSGDADWRDISAWHARIAAKGNKLRVTIPPTARVDVSPDIVFEATPQLFTLNGSVDIPWARITVQEVPETAVGVSSNEVMLNDQLQPIAPRSASIPISSNLVIRIGNDVRLNAFGLKARLQGDLRMMQDQRGLGLNGQINIPSGSFRAYGQDLIVNKGILLFSGPPDQPLLNIEAIRNPDSTANGVIAGVRVTGMADSPRMEVFSDPAMSQQEALSYLLRGQGLGNSGADSSMMTSMLIGMGVAQSGKLVGKIGEAFGVSNLALDTQGVGDSSQVVVSGYVTKDLQIKYGVGIFDSLATLTLRYRLMPRLYLEAVSGIDQALDLLYQFEF 1305
2 -18.000[S] COG3164 Predicted membrane protein  ali follow..  10  1MRRLPGILLLTGAALIVIAALLVSGL------RLALPHLDAWRPAIAASQLSASWQNLEAHNIHAALDGGELSIKRVTLALDVQSLLHMRWQFRDLTFWQLNFRTNTPLQSSDGEGIETSRLSDLFLRQFDFDLRDSQISFLTLSGQRAELAIPQLTWLNGKERHRAEGEVSLSSLTGQHGVMQVRMDLRDDDGLLNNGRVWLQADDIDVKPWLGKWMQDNVALQTARFSLEGTLSKGEIAGGDVWLKQGGASWLGDNTTHTLSVDNLTAQISREQPGWQFYIPDTRITLDGKPWPLPQQDVGGENHTRSDELRIRASNLELA------GLEALRPLAAKLSPVLGEIWQATQPSGKIATLALDIPLQATEKTRFQASWENPGAEHFSGTLAGSVEDGQMKVAMQQAKMPYETVFRAPLEIENGVATLSWLKNENGFQLDGRDIDVKAKAVHARGGFRYLQPTGDEPWLGILAGISTDDGSQAWRYGKALVDYLSGAIQGGEADNATLVYGGNPEGQFEVLVPLRNATFAFQ-ALKNLNIELDFLNDGLWMRSDSVDLGGVKASKLAAAISKEKLLIDADINGPGKAVGPFDETPLKDSLGSLDGDVNARLHLDIPLDGEQVTAELRNNSLFIKPLNSTLKNLNGKFSFVNGALKSGPLTANWFNQP-----NLDFSTTEGAKAYQVAVNLNGDALSGSVTWNGKVGIDLPYHADTTYHIELNGDLRNVSSHLPSPLNKPAGEAIPVNIQADGNLKSFALTGSTIPPLPAQQGVELNLPALDGAQWLALFQKGAA-----------DNVSSSAEFPQRVTLRTPALSL--------GGQQWNNLSVVSAPSLNGTKIEA-----QGREVNATLLMRNHA-----PWLANIKYLYYNPGVAKTHASSPTPTSPLASANTISFRGWPDL--QLRCEECWLW----GQKYGRIDGDFAIKGNTLTLANGIDTGFARLKANGEVNAPGNERTSLKGSLHGSNLDTAAGQNASFNVDYDLHWRNPPWQPTLNGILRTRLGKGEFTDLSSGHAGQLLRLLSFD-------------ALLRKLRFDFRD-TFSEGFYFD-SIHSTTLVDGLEADIAMKGSVDLVRRRLDM---APEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWILRYRITGPVDAPQINEVLRQPRKESQQ.................................................................................................................... 1266
3 -10.100[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis  ali follow..  8  36....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PTINQKVSTELNRPFAIRGDLGETGWRSWVPWPHVHAEDVILGNPPDIPEVTMVHLPRVEATLAPLALLTKTVWLPWIKLV---------------KPDARLIRLSEKTNNWTFNLAQDKNTDPNAKPSAWSFRLDDQGRIAIDDKVSKADITILIDPLGKPLPFSEVTGTKGKADKSTVGDYVFGLKAQGRYNGEPLTGTGKIGGMLALRSESTPFPVQADFRSGNTRVAF--------------SGVVNEPMKMGGVDLRLKFSGDSLGDLYDLTGVLLPDPPFETDGRLVAKIDAEKSSVFDYRGFNGRIGDIHGSLTYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKDAEQSKRSEQRKGEKNVQPADKVLPYDRFETDKWDVMDADVRFKGRRIEHGGSLPIS---DLSTHIILKNADLRLQ-KFGLAGGSIVSNIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGELNGDADIRGTGLLGNSNGNLKLLMNDGLISAAANLNITNGVARPQIFAFDTENALINVTGTASSEQLDLTIDPESKGIRITLRSPLYVRGTFKNPQAGVKPGP-----------LIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILT........................................................................ 682
4 -9.960[S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain  ali follow..  11  793............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGNLLLTGNSTYSGATAVSAGKLSVNGSLASAVSVGSGATVGTVNSGGTLAPGNSIGTLTSTGNATFASGSTYAVEIDADGSSDRLAVTGTITIANDVSLIVTPLGAHSAYSLGTRYTILTATGG-----VTGTFSSVDESFAYLTAKVAQSGDDATTYLSPDSGLLAAATSTANARAAANAVEALGQTSPLEAALFLQQGETQGA-------QLAGE--IHPSLAMALINRSGQSRDVILNRLRSAFEGVDARPILPVAYAEGGQNPFAVDDGALSF-----FRSRGRIDSFGLDGELSGGIKQTALAASADVDGPASLRLG--AIHAQDAETRR-SISFSTLQESLSASYGG--STSQVFAEAAWRFDFDLTHIEPYANITRTDGFQEK--------AIAAVSSGSTRYDQLYTTFGARISRDEGMLGRAMFDLAYGDTAMGSS-EGGGVFSVASTSSPRDAAI-LNLGLLTPSATLTFRYG--------GAGVLDQSAAAELGVRF 1341
5 -7.940[NU] COG3170 Tfp pilus assembly protein FimV  ali follow..  11  37....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGFGA-LHVRS-SLGQPLQAEIDLSGVTEEEAQNLVAKLASDAYQRAGSTLRASGGRVISAQPVAEPFVDIL---------------VDLSGRVSRAYTFLLDPAGSSNTPRNF----AAPRAARPARQAAVRPQADAAAAEPSSGAGYTVQRG---DSLDVASNAVQGQDGVSLDQMLNPKAFIGGNINRLRTGSVLTV-----SAAEAQKVSSREARREV...... 287
6 -7.810[MU] COG3468 Type V secretory pathway, adhesin AidA  ali follow..  10  450.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TDMANHQSDQLNVTGQA-----TGD------KIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVVDI-GTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERL----GSVKGVSYDTAM-AINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRG-LFFGYSHSDIGFDRGGK-----GNVDSYTGAYAGWGAYVDVKVDR--FANTIHGKMSNAFGDYNSNGAGAHVESGFRWV--------LWSVRPYLA----FTGFTTD--------GQDYTLSNGMRADVGNTRILRAEAGTAVS--HMDLQNGADSNQVKVNDDGKFNNDVRGVYQAG---------IRSSFTPTLSGHLSVSYGNGTQAGVVWTF 836
7 -7.340[U] COG5043 Vacuolar protein sorting-associated protein  ali follow..  9  1................MLEGLLANFLNRLLG---------EYIENFDATQLKAVWNGVTLRNLQLKRSAFR-LVEELTLKIPWSSLKNKPV---EIYIVGIRALASMEENVKSQSEVDPHQVLESKRRQMQ-LWEASQIGKAETAYDPKTQTFTESLITRMIDNIQINIRDIHIRFEHLLLSEFSIESCNEEWTSTFVETESQTIYKLCSLRGFGIYSDETAECIDKTDINELMNTFQALITDFQSREKDYIIAPVTGMAKVTINKLPTPEIPRFLSQISFRGFDVSLNDSQISCGMSLAHEAIKAFCEKRRNYIKLYKKKFLAVQLSADESKELD-------VLELNLDISQLKLFRSLAYQEIKNEGFEPQPPKQQ-NSFRGASDENGEVTDDQRKTVIDAIGLNDSIIESAHVGDLQSNTSLFDVRLEVPSGKFSLLKYPKKENVISLELLCNKKDYSFVANLGSLKMYNDDRNFLYPRETSNKEIETTSPSIFTLSFERSSSDDNDTDTLGINLR--------ALEFFYDPNLLL-RVKGFQSSLFANDNGRKLVRLANDAVTDFTSQTVQNLQEYLNEKRKLNVNFQFQTPLLIFPEDCGFISITSQNVETNDKESNSESETLYHLIYDRYRVSLESARLLLGPLNELKNESNKINEEYYL----MNELNTEIF-------IQAQRVPTPQYPRIKVEGNMP----CLSFILSDAQASTMLKDGKASDDDDNGDWRPESSESLDSHESEYKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVNAKLLLSFNQFEDNSHLRMSINSFHINDMLSKSSRDNNRQLMRCYAPDSVDAENTPVIVEIKSVKAGENQSETNTTVDFLCANG--DFYLAKFSILTLIEFLPSFAPPPSNDKQSTPQVSNSAAGKMELNFKIHKIGLRLLEICIDLLALDLSVNSTKGISEVESRV----DKIQVMAWDH--EKDEIVTLIDSKQDSL---------FDLKCKMQEGWFIHSPNPSTDVNIKMGSFTMLCHKQSNFGHYKAIVQSVKYLAETGTHQVQQGTNVNINLYISNPIFQIPLTLENG--LPGSFSLKTPSWLPNLTLNLESKSTTL--RTIYYSKDFDEKGNQLDDLNISLDGSIVQAVDSAITNYAIDLHCGISELLIHLSQA----QYLILLKLASNPSVMTLLSEELYSIDTVNDAISNLSQNSSFDMKFGLHFPKISLNTFITPENSLSPLSNFTLNEIRAEGSY---DLKTGASALIKMASLAIEDVRSEKSRYF........ 1362
8 -6.920[L] KOG0479 DNA replication licensing factor, MCM3 component  ali follow..  12  202...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTFTIQELPESAPAGQLPRAVDCVADLDLADRVK----GDRVRIIGVFRVLPNKQNGVSSGSFRSI----SICGHE-ETKKALLLLGG-----------------MEKILNNGSRLRGDIN---VLLIGDPSVAKSQLLRYVTTGRGSSGVGLTAAVTTDPDSGERRLEAGAMVLADRGVVCIDEFDKMSDID-EQGRVTISK-----AKLNARCSVLAAANPVYGRYNPFKSPNIGMQDSLLSRFDLIF.... 486
9 -6.830[U] COG3210 Large exoproteins involved in heme utilization or adhesion  ali follow..  14  50.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SALSTLSFSLLLALGCVSLSVQAAIVADASAPGN-QQPTING---TPQVNIQAPSSGVSRNVYS-QFDVDGRGVILNNGHGVNQTEL--GGFID--------GNPWLARGEASII------------LNEVNSRDPSKLNGYIEV--------------AGRKAQVVIANSA---------------------G--ITCEGCGF-----------NANRVTLTTGQAQLNNGQLTGY----DVERGDIVIQGTMDSSRQDHTDL---------IARSVKVNAGIWANELSVTPRPTVADVAHLGGMYAGKTESGVGVHNAGEIGASAGDITITADGMLMNSGQINSSQQLVVNTAAAQGNTQLTTAGTLSNS-------GTLAAGGDTSVR-------EVNSTRNSVLGAGV...... 404
10 -6.620[KD] KOG4124 Putative transcriptional repressor regulating G2/M transition  ali follow..  13  491.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QALVASLSKKTNILLLQEPTQLVQQVQQQQQQQQQQQQQ-LQQQVQQQHHVLPISPTSSVSGNSSKSSSPTPQQQQQQLLKKGKLELIEPMETDEGQS------GISESVAAAISITDCKEDI---GGATV--AGIEVVG------AGAVNEETNLSNPNSNHGSSDSSKPPTTLLSVNKRSTAIASKLPTTGNSLP-MQ----ISPNFIEHKYSALDMKELNLRAGKAVASSQGADRMGSPMGHQSDVGISGGSGAGGG--RAVAVGQIGGERGFVNKADG----------RMQKLQQLMKEG................ 767
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;