current user: public

If you have questions about the server, please let us know.

Query: [S] COG2914 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst MRKRFTVPGKIAVEVAYALPKKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTENKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANKLast
1 -68.900[S] COG2914 Uncharacterized protein conserved in bacteria  ali  100  1MRKRFTVPGKIAVEVAYALPKKQYLQRVTLQEGATVEEAIRASGLLELRTDIDLTENKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK 102
2 -10.100[O] COG5131 Ubiquitin-like protein  ali follow..  11  1..........MAIKVELFNKQKALSLSLSNLGSTKLGSLIDY--MAQIIEKPSQKDIIVLVNDQDWEEEYNLEEGDEVVFVSTLHGKTIFSIFFIIFKTN.. 110
3 -10.100[O] KOG4146 Ubiquitin-like protein  ali follow..  11  1..........MAIKVELFNKQKALSLSLSNLGSTKLGSLIDY--MAQIIEKPSQKDIIVLVNDQDWEEEYNLEEGDEVVFVSTLHGKTIFSIFFIIFKTN.. 110
4 -8.710[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis  ali follow..  15  9..........................QVEVDEQTTIAALLDSLGFGDRGIAVALNFSVL---SDWATKICELRKPVRLEVVTAV.................. 65
5 -8.470[H] COG1977 Molybdopterin converting factor, small subunit  ali follow..  16  9LSNPLFFANIMTVKVLIPTPLQKFTATIDC-EAANVGQLIEA--LEANCPGIKRRFLNFYVNEEDIRTDTALSAGDEVSIVPAVA................. 107
6 -7.690[S] COG5417 Uncharacterized small protein  ali follow..  12  1....MAKNTHMNVTVDFTNWGAD-KYDLRIPVHQPIKETLKIEYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL..................... 83
7 -6.470[TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases  ali follow..  20  413...........................VDLPMGATPLDFA-----YHIHSEVGHRCIGAKVAGRIVPFTHKLQMGDQVEIITAKEPNPSR............ 470
8 -5.620[O] COG5227 Ubiquitin-like protein (sentrin)  ali follow..  27.QDVKPSTEHINLKVVGQDNNE---VFFKIKKTTEFSKLMKI---YCARQGKSMNSLRFLVDGERIRPDQTMEDGDQIEAV..................... 105
9 -5.570[O] KOG1769 Ubiquitin-like proteins  ali follow..  11  8.EGVKTENDHINLKV---AGQDGSVVQFKIKRHTSLSKLMKA---YCERQGLSMRQIRFRFDGQPINETDTMEDEDTIDVF..................... 86
10 -5.390[S] COG1673 Uncharacterized protein conserved in archaea  ali follow..  24  14..................................................RVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIK................... 46

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.