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Query: [C] COG3038 Cytochrome B561, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTLKGTAERWDWMSQALHWLIAVLILGLGIGGLIMGNLPKTPNYFWVYTAHKSTGISVLALAVLRLLWRLYVGAPKPIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARGLRTFYWFGLFEMPALVSPNETIRGVALEIHKLSFWALIGLVVLHAGAAFYHHLIQRDATLARMLPRNWFSSKSLast
1 -101.000[C] COG3038 Cytochrome B561  ali  100  1MTLKGTAERWDWMSQALHWLIAVLILGLGIGGLIMGNLPKTPNYFWVYTAHKSTGISVLALAVLRLLWRLYVGAPKPIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARGLRTFYWFGLFEMPALVSPNETIRGVALEIHKLSFWALIGLVVLHAGAAFYHHLIQRDATLARMLPRNWFSSKS 188
2 -49.200[C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit  ali follow..  13  1MQQKSDNVVFEAPVRIWHWLTVLCMAVLMVTGYFIGKATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQY--IFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMVNGYRSHKFG 227
3 -40.500[C] COG3658 Cytochrome b  ali follow..  14  1..MKNKTKVWDFPTRLFHWLLAASLPFMWYSAKTGGD---------MLQWHTRVGLFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIGALMVVALLAAVSFQVGTGLFAADENTFSTNGYLNHLV-------SEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYRVFKKKNLVLPMITGFKYIEGK 189
4 -24.900[C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)  ali follow..  12  51.GEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGP---ALMVQVHTWCGFALLAFWVGFVLINLTTGN-MKGEAHPFVATEQNKFNPLQQLAYLAIMYALVPLLIITG------------LLCLYPQVAGLGPVMLVLHMALAIIGLLFICAHLYLCTLGDTPGQ--IFRSMVDGYHRHRTA 246
5 -23.300[C] COG2864 Cytochrome b subunit of formate dehydrogenase  ali follow..  11  1MSKIEISNRHRTPARISHWMLVICFFMTMFTGVAFFFTEILGTPQIARAIHPFTGILMFFAFIYLALLYWDHNIPEKNDIRWAKGNLGQKMLFWTLNLAMVTLLVTGIIMWRQYFSHYF--------------SIPVLRIAILLHSASAFMLFTGILVHIYMAFWVK-----GSIRGIVEGWVTVR.. 196
6 -13.400[C] COG2181 Nitrate reductase gamma subunit  ali follow..  14  50.............STLFHWGLLCVVGGHVMGILIPEGISEHMYHKMAIGAGLPAGIAACTGLVILTYRRLFDKR----------IRKTSSPSDILTLLLLLFMMLSGVAATFLN-TTVGPWFREIVLFRPDASLMESVPLWFKFHIVIGYVVFILWLVHVFSLPLKYLTRSYVVYRK........... 221
7 -10.600[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains  ali follow..  16  245................AHIALQTTGFLLGLTGVICGLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPDKQSK------YRKYWNWYHHNIGRLLIILAISGIHLAKAGTSWNGGYGF-----------------------AVAVLALTAIGLEVRKFLKKN..................... 370
8 -9.330[S] KOG3114 Uncharacterized conserved protein  ali follow..  10  134.KTANNPDLYGPF-----WICTTLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSAGVFYGYVTI------VPLALYVVLKYFSAPSGLVQLF-YSLFVFIPAL-CLSVVPLEIFRWVIAGLAGFMSATFVALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLY................... 292
9 -8.250[S] COG4244 Predicted membrane protein  ali follow..  13  36VGYLQKKPRFFEVAWWNWLTAAIAIFFAVIFGEFAALAMPYPAAQPALDWHTVNGWSLSAILAGLTAWRGVLRVRN--------PLKTSLPFLMLATVFMVLVCIQIFL............................................................................... 137
10 -8.240[C] COG1290 Cytochrome b subunit of the bc complex  ali follow..  11  1..MSADHSTYTPTTGIEKWVDSRLPLPRLVHDSFVSYPVPRNLNYAY-----TFGAMLSVMLIVQI--------------------------------------LTGIVLAMHYAAETSVAFNSVE----IMRDVNHGWLLRYLHANGASFFFIAVYLHIARGLYYGSYKAPREILWILG........ 132
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.