current user: public

If you have questions about the server, please let us know.

Query: [S] COG3102 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MIMANWQSIDELQDIASDLPRFIHALDELSRRLGLNITPLTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPGEKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNPTLAVTDGKTTIKFHPWSIEEIVASEQSALast
1 -102.000[S] COG3102 Uncharacterized protein conserved in bacteria  ali  100  1MIMANWQSIDELQDIASDLPRFIHALDELSRRLGLNITPLTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPGEKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNPTLAVTDGKTTIKFHPWSIEEIVASEQSA 190
2 -7.870[EH] COG0512 Anthranilate/para-aminobenzoate synthases component II  ali follow..  12  1MIL-----------LIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKVTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLE-----VQFHPESI.......... 172
3 -6.540[G] KOG2944 Glyoxalase  ali follow..  10  101.........................................FGHICFTV---DNIESACAYLESKGVSFKKKLSDGKMKHIAFALDP---DNYWIELVS-ETKPKANISNFRFNHTMVRVKDPEPSIA.............................................................. 182
4 -6.460[E] COG0346 Lactoylglutathione lyase and related lyases  ali follow..  15  223.........................................VHHVAFRVDDHEELQKWIDRMNTIEAPNSGYVNRFYFESLY-VPVS---------LFEFATDGPGFAGDEPYETLKLALPPFLEPKRAE............................................................ 306
5 -5.720[I] COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)  ali follow..  13  1MIYGIGTDIVSLKRIIRLNKKFAGRILTPEELLEFPQAGKPVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGILGKPEFFYGPALSKWLEEQGISRVSLSMSDEEDT.................................................................................. 116
6 -5.640[ER] COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins  ali follow..  10  163.........................................IDHTSNIVKPENLDHWADDVKGRQTGMRARSMVSPCGKVSIPIAAAAHDQPGVLNQND------RDYRGEGIQHIAFLSSNIEQTIAAMETAMETPPKTYYQNLDGRVPGHGQNLDSMERRGILVGGGRILLQRFTRRQIGPMFFE... 326
7 -5.550[S] COG3310 Uncharacterized protein conserved in bacteria  ali follow..  1MTIMNINTSENKDAVAEHTGQWLEKAVIGLNLCPFAKAPHVKNLVRIAISEAKHLDGFLEDLDEELQRLGNTPATELETTLLVHPTLFPDFDVFNDMLDIADAAVVENGLEGIVQIAPFHPDFQFEGTDSDDIGNYTNRSPYPTLHLREDSIAKAAQAFPDASAIFERNIALLEMGHEGWAKLGITSCPY 192
8 -5.530[R] COG3565 Predicted dioxygenase of extradiol dioxygenase family  ali follow..  14  3.......................................LMPFHLAIPVHDLPAARRFYGEVFGLSEGRSAEDFFGHQLVIHQHPQTDS--------QRHAGSNPVDGHDVPVPHFGVVLAWDDWHALAERLQQRGTRFVIEPYIRFKGQVGEQATLFLFDP------CGNALEFKSFRDMGQLFAK... 141
9 -5.400[T] COG1956 GAF domain-containing protein  ali follow..  14.LCALVAGETNFIATLANASALLYERLDGLNWAGFYLVDGKQLVLGPFQGKIACVR-----IPVGKGVCGTAVAENRVQRV-EIVLPITVKGKVIGILDIDSIVYDRFDEDDELGLISVVAGLCEHLEFC............................................................ 154
10 -5.270[G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain  ali follow..  1.MFELTENDIHLSSQAVNKDQAIEMVAQALIQSGYVEEGY-LAGMLEREAQITTYLGNGIAI-PHGSVTTRALVKKTGVKIFQFPQGVAWDKDNIAYLVIGLAADSDGHLALLRQLARLLHDK................................................................... 120

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.