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Query: [S] COG3126 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPWQPKALWQIVGGAALAVSLTGCAHQSAEAPVAAPISTATVAASVAQSTVHGTVNIRERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAPFTYSLPFNPSDIQPNARVIVSAAITRNGQLLFITDTIQEVINRGAGTQADLLLVPVPSVALEIVPAPAAATIQLast
1 -76.600[S] COG3126 Uncharacterized protein conserved in bacteria  ali  100  1MKPWQPKALWQIVGGAALAVSLTGCAHQSAEAPVAAPISTATVAASVAQSTVHGTVNIRERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAPFTYSLPFNPSDIQPNARVIVSAAITRNGQLLFITDTIQEVINRGAGTQADLLLVPVPSVALEIVPAPAAATIQ 173
2 -13.000[S] COG1934 Uncharacterized protein conserved in bacteria  ali follow..  11  1MKSKNKISHLLLACSLLAASLSAFALTGDTEQPAEVKSDKQTLDMETNTVTFIDNVVIKQGTIEIKADKVVVTRPGGDQSKMIIEGFGNPVTPVKGHGQKLRYEIANDFVVLTGDAYLEQLDSNIKGDRITYLVKKQQMEAFSDKGKRVTTVLLPSQLQDKGPAASGQKKS.. 180
3 -12.300[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  10  1M----VKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQ---SWRGVLPCADSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKL.......................................................................... 98
4 -12.100[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  13  3FYMKAFNKLFSLVVASVLVFSLAGCGDKEESKK----------SANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAVEEKLTYTDTYAQENVTIDME.................................................... 115
5 -12.100[M] COG3056 Uncharacterized lipoprotein  ali follow..  13  28RVSESPNMFKKILFPLVALFMLAGCAKPPTTI------------------EVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLR-QMTARGYMVGPNGPVNLQIIVSQ............................................... 143
6 -12.000[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  8  2.......RKGCFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESS------LLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYW--DARGLEMHPLERPRSVTIPAHSAVTLYGSANFLGAHKV......................................... 119
7 -11.800[M] COG2980 Rare lipoprotein B  ali follow..  11  2.......RYLATLLLSLAVLITAGCGTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQT.. 174
8 -10.700[R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins  ali follow..  7  1MPGSPRPAPSWVLLLRLLALLRPACSCAPAHPQQH-----------HSALVIRAKISSEKVVPASADLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEA-------NSQKQYLLTGQVLSDGKVF.......................................... 127
9 -10.600[P] COG4454 Uncharacterized copper-binding protein  ali follow..  15  1.....MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTGKMMFPAKFEFKKGKTVRFAVKNVGELDHEFILDEQKANLEHKAVMPEMEHDNPNAISLAPGESGEIVWKFTNDGMFEFA........................................ 138
10 -10.400[M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis  ali follow..  14  1...MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQEVRQTRGAFAYISLLTNPLGSTELVQLVDNKGQRYTADDAEEMIGKLTGMPIPLN....................................................................... 133
11 -10.400[R] COG3042 Putative hemolysin  ali follow..  20  1........MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQLPGGETID...................................................................................................... 70
12 -10.300[M] COG3065 Starvation-inducible outer membrane lipoprotein  ali follow..  12  1MTQSKRNHKWMYGWLGLGALLLSGCVTIPPAIQGTNLIRSAPKLFIGQEARFGGTVVNVKNEP--NRTRLEIASVPLDSGARPIL----------GEPSQGRVIAYVDEPVDFRGHLVTVVGPIV................................................ 126
13 -9.930[R] COG3218 ABC-type uncharacterized transport system, auxiliary component  ali follow..  13  1MRLSINQKRRALFLAPLFAALMAGCAGAPNNDTFDLSVSSAAVTQGPSLKSRQLLIADPTALKALDSENIVVRLSGSEVSDRLPRMVQSGGVGRPGQGLAIDYQVAFEIDTARNVANIEISVKLLNDRNGTVKAQEVFRASARVSGSGNANFVKALDQA.............. 185
14 -9.280[S] COG4925 Uncharacterized conserved protein  ali follow..  16  9....GIKWMLICLGVFLLAILATGCIEQNNIDQRAISNQSEMNSSEKTVSTEPEHGLALSEMSV-QGHIATFQLYDTVAAKELYEQLPLELDLTNFRDAQWMFYPPKKLNATAQEAYHDGKK-----GELSYYDP...................................... 137
15 -9.180[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  14  1M--KLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKT-DGTYKLEESIEVKDGKITKANYDYKNKDGK........................................................................................... 96
16 -9.090[M] COG1462 Uncharacterized protein involved in formation of curli polymers  ali follow..  13  1M-SHSAKKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIA-HLQQTNRFNVLDRDNMSEIQQEAAIKGQAQRLKGADYVVTGD----TEFGRKEVGDRQSQIAYAKVALNIISTSEVVYSTQ...................................... 173
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.