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Query: [P] COG3131 Periplasmic glucans biosynthesis protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNRRRFIKGSMAMAAVCGSSGIASLFSQAAFAAESDIADGKIVRFDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLDIQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFKYNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQLGIAPMTSMFSCGNNERRVCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAYMDDNPKGFGLLQLDRDFSHYQDVMGWYNKRPSLWVEPRNKWGKGAVSLMEIPTTGETLDNVVCFWQPEKAIKAGDTLAFNYRLYWSAQPPVQSPLARVMATRTGMGGFPEGWAPGEHYPDKWARRFAIDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYVEPFDGYRIQFDWYPTSDSTAPVDMRMFLRCQGEAISETWLYQYFPPAPDKRRYVDDRIMRLast
1 -149.000[P] COG3131 Periplasmic glucans biosynthesis protein  ali  100  1MNRRRFIKGSMAMAAVCGSSGIASLFSQAAFAAESDIADGKIVRFDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLDIQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFKYNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQLGIAPMTSMFSCGNNERRVCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAYMDDNPKGFGLLQLDRDFSHYQDVMGWYNKRPSLWVEPRNKWGKGAVSLMEIPTTGETLDNVVCFWQPEKAIKAGDTLAFNYRLYWSAQPPVQSPLARVMATRTGMGGFPEGWAPGEHYPDKWARRFAIDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYVEPFDGYRIQFDWYPTSDSTAPVDMRMFLRCQGEAISETWLYQYFPPAPDKRRYVDDRIMR 551
2 -7.430[C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K  ali follow..  14  3......................................................................................................................................................................................IGLIGVNSALTISAIGSALGMGAAGSAAIGAWKRCYMQGKPAPFLLIVFVSA---PLTQIIYGYILMNTLYEVMMQTNPWLLLGAGIG-GGFAIAVSGFAQGKAA-------------AGACDAFSETGKGFATYLLVLGLIESVAL-------FVMV................................................................................................................................................................................................................... 136
3 -5.880[K] KOG0528 HMG-box transcription factor SOX5  ali follow..  22  598.........................................................................................................................................................................................................................................................................EPHIKR----PMNAFMVWAKDERRKILQAFPDMHNSN---ISKILGSR-WKSMSNQEK---QPYYEEQAR------SKIHLEKYPN----YKYKP............................................................................................................................................................................................... 672
4 -5.410[P] COG1393 Arsenate reductase and related proteins, glutaredoxin family  ali follow..  13  2....................................................................................................................................................................................................................................IKIYTVSSCTSCKKAKTWLNAHQLSYKEQNLGKEGITREELLDI--NGIASIVSSKNRYAKALGVDIEDLSVNEVLNLIMETPRILKSPILVDEKRLQVGYKEDDIRAF-LPRSVRNVENAE......................................................................................................................................................................................................... 125
5 -5.380[K] KOG0527 HMG-box transcription factor  ali follow..  21  101.........................................................................................................................................................................................................................................................................KPHVKR----PMNAFMVWAQAARRKLADQYPHLHNAE---LSKTLGKL-WRLLNESDK---RPFIEEAER---L--RMQHKKDHPD----YKYQP............................................................................................................................................................................................... 175
6 -5.280[M] COG1452 Organic solvent tolerance protein OstA  ali follow..  10  11...................TFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKK------------RIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATNVPVFYLPYLTVPIGDTRK-FLYPTASYGSRNGYIYWNLAPQYDLETLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQEIDYSKVSDINYFSDLDEDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSYRLMPQLSYNYYAPETMKYLDL-------DLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNT--TTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV-----------AGIVLERDTVLLDDYTQTLEP-------KIQYLYVPEKYQDN------LYDSTLLQTDYYGLFR-------SRKYSGDRI.. 543
7 -5.230[L] COG3285 Predicted eukaryotic-type DNA primase  ali follow..  12  8.................................................................................................................................................................KPLWPDANDGIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGEQFFQR-LLELVEVFGDKKPYLQIDRVEGLAAVAQFDLDPGPDVPFKTVEAAKEMRARLDDLGLVSF------------------CKTTGGKGLHVVTKRSKLTWPEAKGFAHDVCLQMARDNPALYLT-RIGRIFLDYATAVAPLSPRPLTWAQVKTDLDPKRFTLRTVPGLLAKSTAWKDYGDGHRLLEA..................................................................................................................................................... 286
8 -5.130[T] KOG1024 Receptor-like protein tyrosine kinase RYK/derailed  ali follow..  8  344............................................................................................................................................................................RLSCLVQEGNFGRIYRGTYNDVLVKTVAQHASQLQVNLL--LQESMMLYEASHPNVLSVLGISIEDYATRNLKSFLQDPSYARSVTTIQTVLMGSQLAM-AMEHLHNHGV---------------IH----------------KDIA-ARNCVIDDQLRVKLTDSALSRDLFPGDYNSLGDG--EYRPIKWLSLEA-WSFG-VLMWEMCTPYEMEHYLKDGYRLAQPFNCPDEL---FTIMWASMPAERPSFSQLQIC......................................................................................................................... 598
9 -5.100[L] KOG0966 ATP-dependent DNA ligase IV  ali follow..  8  172.VKSKPFLHCVENMSFVELKYFFDIVLKNRVIGGQEHKLLNCWHPDAQDYLSVISDLKVVTSKLYDPKVRLKDDDLSIKVGFAFAVNLSYEKICRTLHDDFLVEEKMDG----ERIQVHYMNYGES-----------IKFFSRRGIDYTYLYGASLSSGTISQHLRFTDSVKECVL---VTFDAKRRVILPFGLSAKEALSFNSINNVDFHPLYMVF-TPLPLHQRKQYLNSILSPLKNIVEIVRSSRCYGVESIKKSLEVAI--SLGSEGVVLKYYNSSYNVASRNNN--PEYLEEFGENDLIVIGRDSGK-----HIQNSRRRVKKILSFCSIANGI--SQEEFKEIDRKTRGHSKIPAEWIDPSES-------VLEIKS-----RSLDNTETNMQKYATNCTLYGG-RIRYDKEWTDCYTLNDLYESRTVKSNPSYQAERSQLGLIRKKRKRVLIFAGLLFIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLI-------SCKTTTECKALIDRGYDILHPNWVLRLILIEPNYCFNVSQKMRA 789
10 -5.070[W] KOG4802 Adhesion-type protein  ali follow..  7  172..........................CQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSS--KFNISIEPVIYVVQRRWNYGIHPSEDDA--AQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFR-------SSKDPSAPPAPANLRLANSTVNSD----------------------------GSVTVTIVWDLPEEPDIPHYKVFWRKTTDGFQNSVILEKLQPDCD----YVVELQAAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQV-----KVYWKKTEDPTFPEACAHNRTTGSEASSGMTHENYIILQDLSCKYKVT----VQPIRPKSHSKAEAVFFTTPQDVNITGHFSWKM--AKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRL-------------EVQVLTPGGEGPATIKTFR--------------TPELPPSSAHRSHLK--------RHPHHYKPSPER............. 679
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;