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Query: [S] COG3147 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRMASNNVELDPIPVETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNADKVNEIVGKLRSAGFRVYTSPSTPVQGKITRILVGPDASKDKMKGSLGELKQISGLSGVVMGYSPNLast
1 -85.400[S] COG3147 Uncharacterized protein conserved in bacteria  ali  100  1MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRMASNNVELDPIPVETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNADKVNEIVGKLRSAGFRVYTSPSTPVQGKITRILVGPDASKDKMKGSLGELKQISGLSGVVMGYSPN 224
2 -37.100[D] COG3087 Cell division protein  ali follow..  12  128...........................DMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASSQQPYQDLLQTPAHTTAQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITT----NNGWNRVVIGPVKGKENADSTLNRLKMA-GHTNCIRL.... 315
3 -14.200[S] COG3266 Uncharacterized protein conserved in bacteria  ali follow..  14  227.............................APVRNGSTTRQAAVSEPAERHTTRPERKQAVIEPKKPQTTAKTTTAEPKKPVAPVKRTEPAAPAATPKATTTTAAPTATASAAPVQTAKPAQASTTPVAGGGKSAGNVGALKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVY--ETTRNGQPWYVLVTGMYASKEDAKRAVSTLPAD------VQAKNP. 412
4 -12.600[M] COG0797 Lipoproteins  ali follow..  12  157.......RITGSSVLVRV-----PRLID---------------------------------------SSKTADLLDMKATGTANVRVQYAGRAPLDGHDMPYLMASYIPKGSRSPGVAPEGQIATGVMVASASPNFVPAPASNPNYGGSTQTALVGSKKNAALQAMPLVNGV-------QPAFEQFVILPEIGPFLAERPEGNFMREPAAPGGNYLRVPT.... 331
5 -11.600[S] COG5373 Predicted membrane protein  ali follow..  9  4.............AIALLAFVMALAAFLGGRRSAERLDREI------------ESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGRWPVWVGGLA-----------LALGG--YFLVQYSIEAGLLVRLTLGEVIRRRDVPAIADRIPGVLTAAGAVTLF... 205
6 -9.470[R] KOG2295 C2H2 Zn-finger protein  ali follow..  6  397...........................DVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLR--TFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPAN-SDIKLCAKIALNLDEKFRLWA........ 633
7 -8.990[K] KOG3766 Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans)  ali follow..  7  706.............................SSAVDFTAGSGEESEEEDADAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGRGAPAASSAEEGEKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVDVVRFIKLTDCAPLAKIFQEQDIQALLLLTLPTVQECMELKLGPAI---KLCHQIERVKV-----AFYAQYA.. 893
8 -8.470[S] KOG3282 Uncharacterized conserved protein  ali follow..  10  1MKVPFVNFMISSFPAAVLVGAVVGFMIG---------SVADASRGYSSKNANKASNPEKESPVSVSNDEDSESETELLDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLVRIWENAGQAKITLQA---QTEETLELLQAQAMSLGLCARVIHTQIASGSATVLGIGP-GPVSVINEVTGSLK............... 203
9 -8.150[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  9  135...........................................................................................DPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREEL----LFPF--------APIPRVSVGTFSSEEVAEQALRFLDGR-GYMNLILRVE.. 266
10 -7.640[M] COG0810 Periplasmic protein TonB, links inner and outer membranes  ali follow..  10  1MRENLNRYVIAGGLSLAFHALLLITTDEAQVFAMPAGNPTQSVSINMVSMPKVAPAQPEQTQTEQSKPESVKPTPVQEVVKTPPAKPKVKPHKPKPQTVKKPVPAEQVPSKSVAKPQPEKVERTAETAQKPAPTPNQQPSQPTAASQ-----GITSQPILVDKPALVSAQV-YPRIARKRGIEGTVMYEIWLGNQIKQQLLSSSGTEALDQSALEAI--KFSP. 227
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.