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Query: [S] COG3152 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLLNVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWILVECGFLSGTDGSNRFGAEPKWIKKSLast
1 -94.800[S] COG3152 Predicted membrane protein  ali  100  1MSLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLLNVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWILVECGFLSGTDGSNRFGAEPKWIKKS 146
2 -9.520[I] KOG3845 MLN, STAR and related lipid-binding proteins  ali follow..  12  1MSGRQPLIS-RIGVSRKRFIVITFFDTSITILLWLLCTVTRDDEINIFNPKFIRISLFDIVLLAVLRM--CLVKQWYTVAFTTLASSAYILMKVLFYFNHSSSAVPPLLLIITSFTLCWSEFYLMPFQILPRERR........... 155
3 -8.750[R] KOG4758 Predicted membrane protein  ali follow..  8  107VRASRKDIQLKVKEEYNSY-TALLFLVFPAILLTLRSYVWDGCLPAFPVQLYQAWLLFLYAGLVMRRANGSDIRSWWLYHHYFAMAMSLVSLTWEIKGQPNCVQKQKGVRLFLQWAMMQGVAMLL-------QNRY.......... 241
4 -8.660[S] COG5530 Predicted integral membrane protein  ali follow..  26  68.........HRAEIARMAGWRDRLTNWAITVVAAMLSVSLSTASAHHGVLLFAMLLILLLLWIEARRYFDFYRA........................................................................ 137
5 -8.650[S] COG5546 Small integral membrane protein  ali follow..  14  1......MINLKLRLQNKVTLMAIL--GAIFLLAQQLGIKLPSNIADIANTAVTLLVLLGVVT-TTKGLSDSEQA........................................................................ 67
6 -7.880[S] KOG4502 Predicted membrane protein  ali follow..  11  541...YQILLSLQK--------TLSIVYFLVIFILYFYKGAILPYPRYVR--VMEFFVIIPFIPIEYLRIN-WGSRG--STVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMGFFVILETLLSLVLTITFSSSG.............. 667
7 -7.500[U] KOG1688 Golgi proteins involved in ER retention (RER)  ali follow..  17  107....EEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFF-------PVFWPILVMYFITLFCITMKR............................................................................... 164
8 -7.150[S] KOG4556 Predicted membrane protein  ali follow..  8  17LSIARLVFDLIGNL-----WVVVVFDFIVLLISGLFGATQKRRPLLYTLLSSNALSVTINVLIFLWYIG-PYSSSFFLCDAEFDVIRKKWVQKQCLIPFYSVEASQAILHIIFAIVTSIFSILVIVELRKKPIRSNSQSINHYAQI 177
9 -7.120[S] KOG3114 Uncharacterized conserved protein  ali follow..  11  102VGAYKPYFDVD-RLKESPFWICTTLIFVAASIGTFVTYIAHKLKTWSAGVFYGYVTIVPLALYVVLKYFSAPSGGYWVIAGLAGFMSATFVALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLY................... 292
10 -7.100[O] COG5264 Vacuolar transporter chaperone  ali follow..  8  125.............ANERTFWLVVVLLGSLALALYNSAGERLGQAFGVVYTLLAIFIGFYAWKLHAKRSQMIKSR----------------------SPAPMTDYWGPLIVGTALAISLIVNMSFALKDAVYQNLIEPDRLLVKLFT 238
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.