FFAS03 results for COG3175

Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200`
#	Score	Template	Links and tools	%id	First	`MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGT`	Last
1	-106.000	`[O] COG3175 Cytochrome oxidase assembly factor`	`ali`	100	1	`MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGT`	202
2	-79.300	`[O] KOG2540 Cytochrome oxidase assembly factor COX11`	`ali follow..`	29	268	`.QQFWRMKSTDSPEDAARKLRAKSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHMKKIEDRVLKIRFDIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTDKPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPEITADCDTITLSYTFFEAKEGLKLNFPSYAKPH`	475
3	-9.360	`[U] KOG1631 Translocon-associated complex TRAP, alpha subunit`	`ali follow..`	7	2	`.......................RHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGEDAEADEDSDTGSSSSPNADTYLLTPGQQLDLPGGKPVEFLIGFTNKGAEEFVIETVEA-YPMDFNYFIQNFSAVAY-NREVKPGFESTVSYTFLPSDQFAGRPFGLNIALAYRDANGI............`	175
4	-8.780	`[U] KOG3317 Translocon-associated complex TRAP, beta subunit`	`ali follow..`	9	5	`...................HRESGCLLRLLLSCTEILDKEIPKLQMFKHLLTLFALCAVFSTCLSEDETRA-------RLLVSKQILNK------------YLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEA--FDVVG---AVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSE....`	163
5	-8.430	`[P] COG4454 Uncharacterized copper-binding protein`	`ali follow..`	14	1	`...................................MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTMKETPDGKMMFTP--AKFEFKKGKT--VRFAVKNVGELDILDEQKANLEHKAVMAKAPEMEHDNPNAISLAPGESGEI.........................................`	125
6	-8.250	`[E] COG0832 Urea amidohydrolase (urease) beta subunit`	`ali follow..`	12	2	`.........................................................................................IPGEIIAAAGEIELNAGLE-TVSIEVANSGDRPVQVGSHYHFAETNPGLIFDRDAARGKTAVRFEPGQTRQVTLIPLSGKREVFGFRQQV.......................`	97
7	-7.950	`[S] COG4719 Uncharacterized protein conserved in bacteria`	`ali follow..`	13	1	`..........................................MFP-THLTLTALALTSVSFAAQAAPAATSPIKLSGATYSVAQVTENGKTTERLVDASGKGALPGSLLQMTQKVQNVSARSVNGLRLNMRVDPATI.................................................................`	100
8	-7.330	`[S] COG1470 Predicted membrane protein`	`ali follow..`	8	580	`..........................................................................GIKKEIPVKIKLIGSYNMNVNLLNYRLTITAGEEKTAMMDIFNFGNAPLTNLKITVKGPQGWDVKVDPSQI-----PSLSPKGRERVTITVKVPEGTPAGDYRVQITVKADQAEWQDTLRVVVRQRST`	702
9	-6.730	`[T] KOG3900 Transforming growth factor beta, bone morphogenetic protein and related proteins`	`ali follow..`	11	280	`..........................................................EKRQAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKA------C-C------VPTELSAISMLYLDENEVLKNYQDMVVE.....................`	391
10	-6.530	`[M] COG1361 S-layer domain`	`ali follow..`	13	709	`..............................................FKVDVDENAKSGRYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNVGGEQAESVVI-PFTLVKRTDYIGT----------LNPNQTGEGVITLSIEKDAVPKVYNILIRMRAVGDKEKGDDNVYVFEG..`	859

FFAS is supported by the NIH grant R01-GM087218-01

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