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Query: [S] COG3222 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSCLPVSVLVVAKAPEPGRVKTRLAAAIGDKVAADIAAAALLDTLDAVAAAPVTARAVALTGDLDSAADSAEIRRRLKSFTVFRQRGDAFADRLANAHVDAADGYPVLQIGMDTPQVTAELLADCARLLLQIPAVLGLAFDGGWWVLGIRTPTAAECLRAVPMSQPDTGELTLKALRDNGIDVTLVQRLGDFDIVDDIALVRDCCAPGSRFAQATRAAGLLast
1 -96.200[S] COG3222 Uncharacterized protein conserved in bacteria  ali  100  1MSCLPVSVLVVAKAPEPGRVKTRLAAAIGDKVAADIAAAALLDTLDAVAAAPVTARAVALTGDLDSAADSAEIRRRLKSFTVFRQRGDAFADRLANAHVDAADGYPVLQIGMDTPQVTAELLADCARLLLQIPAVLGLAFDGGWWVLGIRTPTAAECLRAVPMSQPDTGELTLKALRDNGIDVTLVQRLGDFDIVDDIALVRDCCAPGSRFAQATRAAGL 220
2 -47.800[S] COG1920 Uncharacterized conserved protein  ali follow..  14  1...MKTCAIIPVSRF--THAKTRLSPTLSPSEREGLLKAMLMDVSGALARHVDRVLVISADEDVLEYAYSL-------GLKILEEEGERDLNGALEQAMDFCEFDRVIITPSDIPLIGKADVSNLLDHASRADVVIAPANGGGTNTLILRPSAMSLRF------GDCSFFEHIHEARERGLSVSVYDSFYDVNTAEDLGEIILH-GEGTHAREYLRKLRF 206
3 -14.200[H] COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase  ali follow..  15  4........LLMC-----GGKGTRLGRG--EKPLFEVCMKLIDHSLLQYKDFDVIAIT-------SPHTPATESYLAEKGVEVYRAAGKGYIEDYSEACRELAINEPVIVASADIVYIRDIAFDIVDAYMKTIKPALTVVMEGEPVGVNI------------------IDSLLINTWQEEEIYSIEKDSVVNVNTVADVERAERLWTTMRKERGWQRD... 181
4 -12.200[R] COG2068 Uncharacterized MobA-related protein  ali follow..  14  7.SRLKVGIVLLARSSRMGGPNKLLALFDG--------KPLVRRTAERALGSKASGTIVVTGHQ--RERVRAALSGLDVTFADNPDFANGLSTSLKAGIAYL-DTAGAMIVLGDMPGVVSGDLDRLIDAFRKAGSVVRASHQG-----GNPVLLPRALFPAIAHLEGDTGARHLVEAEGLDVVDVEIGESVDVDTREALEGAGGVLQD............. 206
5 -12.000[H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A  ali follow..  12  1...MKHVNVLLA-----GGASRRF----GEPKAFVKWRMLYECAKEALGE-----QTVIISRPEFIDRFQENGENEVYQDAEPFQGMGPLA--IYTAFKKT-DGDLYTVLSCDTPLIQRRTMLELKRLMIAGADAVVPISDGQVQLIAIYHKRIMPVLYDQLSEKRLRISDLLGRISVCYVQAENIGEFININTRDDFSCLEEKSNSLKR.......... 198
6 -10.900[M] COG1861 Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog  ali follow..  13  1..MNDILFIIQARM------STRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKETDDILEAHCIKQGFRVFRGSEERVLDRFVKV-IEAVKPSVIIRLTGDNPFVDPELLDVMIQAHQGSDYTYILNAPLGICGEVVNANLLIDISRLEDQYQEHVTLYIRNHPALYRVQFLEAPERFRIDTKEDYESIKALYQ.............. 210
7 -7.900[M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase  ali follow..  13  1..MTNFTVIIPARY-----ASTRL----GKPLAEIAGKPMIAHVFEKAMQSGAKRVIVA----TDHEQVATVARGFGAEVCMTSETHQSGTERLAEVVEKLGIAEDEIIVNGDEPLIPPAIVRQVAENLAKYQVLTDHAGYVLYFIYAYRAGFIKQYIQWQPSVLEQIESLEQLRVLWYGEKIHVELA--GVDTAEDLEKVRSILEK............. 258
8 -7.600[FH] KOG2702 Predicted panthothenate kinase/uridine kinase-related protein  ali follow..  12  123.SPNLKRLVGLAGPPGAG--KSTVANEV----VRRVNKLWPQKAASFDAEVNPPDVAIVLPMD---------------------------GFHLYRSQLDAMEDPKEAHARRGAPTFDPALLLNCLKKLKNEGSVYVPSFDGNYILLEISDMFDEKWF--IDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKSKTNADLLIRSMN.... 332
9 -7.360[M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)  ali follow..  14  1MPQNTLNIVILA----AGK--TRMYSKMPKVLHEIGGETMLGRVIDTAAALNPQNICVVVGHGKE-----QVLDTVKRDVVWVEQTEQGTGHAVKTALPHLAAEGRTLVLYGDVPLIDVETLETLLEAAGNEVGLLTDVPADGLGRI......................................................................... 140
10 -6.920[R] COG5014 Predicted Fe-S oxidoreductase  ali follow..  13  111.......................................................................................EEVAERLLEISKK-RKCDLFRISGAE-PILGRRSAEHVRKVIELVNNTFILETNG--LMFGFDKGWDEESFEKITGASGEYFRYQLKALEHLHGKVHFVAVVYDLFREKGLKELEKRLPIPCRI......... 249
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;