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Query: [S] COG3247 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTAHNNFDRPSLPHELSSKWGWFVALGVALLILGGIAFGNLFLATVVSVYYVGLMMLIAGIIEIIHAFGVKTWGRLFFWLLSGLLYTAAGIVTFINPVLAAGVLTFLLAAALIGSGAFRIWLGFKSKPSQGWGWIVAAGAVTLLLGLIIAIQWPVNSLFILGLFLAIDLIFQGWSFIAFGLGIKSRLast
1 -89.900[S] COG3247 Uncharacterized conserved protein  ali  100  1MTTAHNNFDRPSLPHELSSKWGWFVALGVALLILGGIAFGNLFLATVVSVYYVGLMMLIAGIIEIIHAFGVKTWGRLFFWLLSGLLYTAAGIVTFINPVLAAGVLTFLLAAALIGSGAFRIWLGFKSKPSQGWGWIVAAGAVTLLLGLIIAIQWPVNSLFILGLFLAIDLIFQGWSFIAFGLGIKSR 187
2 -8.530[O] COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  9  174....................................................LGKDIIALGML-----IEDKPFYWRIPGIIEHALIVII-VTLVAYKITKSYLASSIAATFAALDPLLFATGIV--------------AMLDIHVAFFIALFM-LDRIRLSGIALGLAAATKLSGAFAFPI..... 286
3 -8.400[R] KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily)  ali follow..  15  68.......................VVFAG---MLIGAYSW-GIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLI......................... 206
4 -8.190[G] KOG2533 Permease of the major facilitator superfamily  ali follow..  20  131..........................LGLALFYVGYIIFSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAALRFFLGVA-LWPGLAYYMSRWYRGKHLGKRIGWYYTAAQIAAAAVSLVARGLYGYQWMLIWGVVAIAQALSIPWWLP................................ 278
5 -8.180[S] KOG2766 Predicted membrane protein  ali follow..  15  155...............ILHARYRVIHFIAVAVCLLGVGTMVAGREDNSGSDVLIGDILVLLGASNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLASIHWDWKIALLFVAFALCMFCLYSFMPLVIKVTSATSVNLTADLYSLFVGLFLF-----GYKFSGLYILSFTVIMVGFILYCSTPTRTAE 341
6 -8.090[S] KOG4502 Predicted membrane protein  ali follow..  13  533............................................TVKRSSLVYQILLSLQKTLSIV-------------YFLVIFILYFYKGAILPYP-RYVRVMEFFVIIPFIPIEYLRINWGSRGNLLESTAFLALSTVLSIIIILVYLEFFQN-------YVLFIEEIFTYVMGFFVILET... 653
7 -8.020[S] COG1814 Uncharacterized membrane protein  ali follow..  12  147........................LVLGLIIEITGAHAGTLGTTNNTVAAGVIGLIVGVGAAISMASA-PSVAALVTGVGYIAAVALMSLPYFLIHDVYLAFAASIAVGVMLTFLLTFQSAVYA-DRDFKFEFLQTVGLLLGTAFLTYLL----------WLGSLFGIRNIL............... 299
8 -7.990[G] KOG1581 UDP-galactose transporter related protein  ali follow..  9  149.......................LVTLGCSVFILFPAGDDVSPYNKGRENTVWGVSLMAGYLGKLFKGYNMEIHNQIFYTTLCSCVLSFTGLILQGH-VSLHRDCLLDIALLSTVATASQFFISYTIRTFGALTFAAIM-LASIMLSCIWF-----SHPLSWEQCIGSVIVFGSLYAKNLLNNKKNS 326
9 -7.770[T] KOG2290 Rhomboid family proteins  ali follow..  10  654....................YRLWLSLGILHCLVSICFTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEV---PAGSQFGILACLFLARPWRAFFKLLAVVLFLFTF-GLLPWI-----------NFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVL. 821
10 -7.760[U] COG5120 Membrane protein involved in Golgi transport  ali follow..  18  13.......................TTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD--------MLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISF.............................................................. 107
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;