FFAS03 results for COG3343

Query: [K] COG3343 DNA-directed RNA polymerase, delta subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190`
#	Score	Template	Links and tools	%id	First	`MKLDVFAGQEKSELSMIEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGENKWGLRSWYAIDEIDEEIITLEEDEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDFTEESAEVEYDEEDPDDEKSEVESYDSELNEIIPEDDFEEVDINEEDEEDEEDEEPVL`	Last
1	-56.300	`[K] COG3343 DNA-directed RNA polymerase, delta subunit`	`ali`	100	1	`MKLDVFAGQEKSELSMIEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGSFIPLGENKWGLRSWYAIDEIDEEIITLEEDEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDFTEESAEVEYDEEDPDDEKSEVESYDSELNEIIPEDDFEEVDINEEDEEDEEDEEPVL`	191
2	-12.000	`[K] KOG2478 Putative RNA polymerase II regulator`	`ali follow..`	11	430	`......................................................................................DKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD...`	531
3	-11.200	`[J] COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis`	`ali follow..`	16	685	`.............................................................EEIPVDELFFY--NDKYIKGKQARKTKVDRDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFDDTVDFFEDENDLLP..`	813
4	-11.100	`[K] KOG2473 RNA polymerase III transcription factor (TF)IIIC subunit`	`ali follow..`	9	443	`......................................................................................KDMKKCKNTNKEKDDDVNADEDSEDLDDEYEEAANDDDISISSHGYGDMENNSRTYLQGLFNRFPSSASALYGSANDDNDSDGEYPIYEQESNALDDDEEDDE..`	545
5	-10.800	`[R] KOG4334 Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain`	`ali follow..`	10	1	`...............................................................................MEQESGGKKSNEQLLSEREAIMRQLAMLGSGPEDLDVDDEEEDEEEEVEKMEEGVEETMENASVVKETTPVKDENIVEDSNSSEELFPYLDSPPEDKIQEISANDTEIDQ..`	110
6	-10.100	`[S] COG4708 Predicted membrane protein`	`ali follow..`	6	1	`..MKKLTIRDVADIAIVAAIYVVLTVTPPLNAISYGAYQFRISEMMNFMAFYNPKYIIGVTIGCMIANFFVFVGG....................................................................................................................`	79
7	-9.690	`[R] KOG4547 WD40 repeat-containing protein`	`ali follow..`	11	485	`..AERIARQTHRQGPLNVWVKWCLIIHGG---VSIPNLMSTLSSLHST----LKRRSDLLPRLLALDARLDCT------INKFKTLNYEAGDIHSSEPVVEEDEDDVEYNEELDDAGLIEDGEESYGSEEEEEGDSDNEEEQKHTSSKQDGRLETEQSDGEEEAGYSDVEME...................`	643
8	-9.510	`[R] KOG2321 WD40 repeat protein`	`ali follow..`	11	431	`FSYEEHRQKIVKERLEKQRASKIRSQNRPK-----AGLASRLSYQENKLRKKTGVTDG---PSILEDERFKNVFTD-----KEFEVDEDTLEYKQLHPSRSEARGLTAAEESEEEKEHTKGIKFSSDEESLSDMEEENETFDALVDRRKTEQQVSNEKTPQETIRSTPSGMEMTFKVEKKKKSKPVNRD..`	608
9	-9.490	`[S] COG5604 Uncharacterized conserved protein`	`ali follow..`	12	55	`................................................................................QNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEID..`	163
10	-9.490	`[J] KOG2256 Predicted protein involved in nuclear export of pre-ribosomes`	`ali follow..`	12	55	`................................................................................QNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEID..`	163
11	-9.140	`[O] COG5021 Ubiquitin-protein ligase`	`ali follow..`	11	1808	`...RQLLDSNKVEADQYQLCKLVIDLG-------LPSVITEAMASIDLNYPFSKKIFNVAVEALNTISSTRNNFSEHFKIEDHDEVEDEVDESDKEEIPDEDIEEDDDDDTSLIGDDDAMAFVDSDNGFEVVFSDEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVDDADGLIINIDQPS..`	1998

FFAS is supported by the NIH grant R01-GM087218-01

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