FFAS03 results for COG3409

Query: [M] COG3409 Putative peptidoglycan-binding domain-containing protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 .`
#	Score	Template	Links and tools	%id	First	`MKNLKLKALSLGIVSTVLISSSAFAAIPTVIQNHPIPKVSAPVATNLNATKSKMFASTRTYGTSFGRYMTAQQVIDNGGIIQEGDTGEPVADIQRRLGIYDDGIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDGIVGAQTWYYLK`	Last
1	-69.000	`[M] COG3409 Putative peptidoglycan-binding domain-containing protein`	`ali`	100	1	`MKNLKLKALSLGIVSTVLISSSAFAAIPTVIQNHPIPKVSAPVATNLNATKSKMFASTRTYGTSFGRYMTAQQVIDNGGIIQEGDTGEPVADIQRRLGIYDDGIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDGIVGAQTWYYLK`	148
2	-21.400	`[V] COG3023 Negative regulator of beta-lactamase expression`	`ali follow..`	29	184	`.....................................................................VEPTPICGGRFLARGEQGQPVEALQSMLEIAITGIFDEATEIVIKAFQRHF----------RPQNVDGVADVSTIDTLY`	257
3	-14.800	`[M] COG2951 Membrane-bound lytic murein transglycosylase B`	`ali follow..`	25	354	`.......................................................................................ATMKELQTKLE-KVDGILGSGTRVAIQKEQQR-----------LGMPADGWPTQALLQAL.`	408
4	-13.300	`[S] COG2989 Uncharacterized protein conserved in bacteria`	`ali follow..`	18	240	`.............................................................................KATLRPGQWSNDVPALREILQRAVRAAYDNELVEAVKRFQAW-----------QGLGADGAIGPATRDWLN`	349
5	-11.400	`[R] COG3179 Predicted chitinase`	`ali follow..`	14	247	`.......................................................................AAGFEAGEELANNEVLDEVAAFDEIMKFETDTDPATERKAALKLFQNE-----------LGLPETGELDEATKDELL`	320
6	-8.730	`[R] COG3926 Putative secretion activating protein`	`ali follow..`	19	78	`...........................................................................................ALPAGVDYVVDGAVNSGPGRSIMWLQQALRP-------AYTGRIDGVLGMGTLAALK`	128
7	-6.740	`[S] COG2121 Uncharacterized protein conserved in bacteria`	`ali follow..`	20	72	`...............................................................................IASQHFDGSIAAGLFESFGFKN--IRGSSKKGGVKVLIEGLKRLKEGCDVA--ITPDGPKGPR......`	130
8	-6.440	`[OW] KOG1565 Gelatinase A and related matrix metalloproteases`	`ali follow..`	13	15	`...............................................................................TVSGRVLGLAEVAPVDYLS------YGEDITEALRAFQEAS-----------ELPVSGQLDDATRARMR`	81
9	-5.990	`[S] COG4322 Uncharacterized protein conserved in bacteria`	`ali follow..`	21	266	`...............................................................................LIG-GNVSNTVMMRKLPLDALAPPESQTATPSSTLLHQ...............................`	345
10	-5.930	`[A] COG5188 Splicing factor 3a, subunit 3`	`ali follow..`	12	320	`..KLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEEHLSGKSFDMPLGPDGLPMPYWLYKLH-GLDREYSNKVYNGRRTFERHFNEERH----IYHLRCLGIEPSSVFKGI.`	464

FFAS is supported by the NIH grant R01-GM087218-01

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