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Query: [S] COG3461 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADQYHEPVSELTGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRRNMPGWDEALRTYLFTDKPITEIEEETSGGSENTGGDLGIRKLLast
1 -58.400[S] COG3461 Uncharacterized conserved protein  ali  100  1MADQYHEPVSELTGKDRDFVRALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRRNMPGWDEALRTYLFTDKPITEIEEETSGGSENTGGDLGIRKL 114
2 -23.200[S] COG1633 Uncharacterized conserved protein  ali follow..  19  1MKSAYKETIEEVRNLKGIEEAIALAIDREKEAREFYLQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELP...................................... 76
3 -20.800[S] COG1814 Uncharacterized membrane protein  ali follow..  19  2..........ETTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFRLY................................ 73
4 -20.600[P] COG3546 Mn-containing catalase  ali follow..  14  132.........AYIDTIGEVTADLRSNIAAEARAKIIYERLINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNN...................................... 198
5 -18.500[S] COG4902 Uncharacterized protein conserved in archaea  ali follow..  13  130............MGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHLRAFTKVLADN......................................... 190
6 -17.700[R] COG2406 Protein distantly related to bacterial ferritins  ali follow..  22  97.........ARLPDKPTVQEILRVLVAAERCAVKGYTEICNMTADHRTYELSLAILNEEIEHESWFSEFLGEGPSG...................................... 165
7 -15.600[P] COG2193 Bacterioferritin (cytochrome b1)  ali follow..  22  1...........MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDTKLAKKERAESIEEMQHADKIIDRIIFLE........................................ 66
8 -14.300[C] COG1592 Rubrerythrin  ali follow..  18  2................GTLENLVKAFIGESMARNRYTFYAKVAKDVFIQRVFLETAENEKEHAENLLKFIQQLRGD...................................... 64
9 -14.300[H] COG2941 Ubiquinone biosynthesis protein COQ7  ali follow..  17  38............KDSNILDSVIRVDQAGELGANQIYKGQHFILQDPKVAPTIQHMWDQEKYHLATFDNYVLKNR........................................ 101
10 -14.300[R] KOG4061 DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5  ali follow..  17  38............KDSNILDSVIRVDQAGELGANQIYKGQHFILQDPKVAPTIQHMWDQEKYHLATFDNYVLKNR........................................ 101
11 -13.600[S] COG3396 Uncharacterized conserved protein  ali follow..  12  18......EPQDWMPDAKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED................................... 92
12 -12.800[S] COG2833 Uncharacterized protein conserved in bacteria  ali follow..  18  161............TRNDLEARLAVVPLILEARGLDVTPSLLEKTGDHETAAILNIIYNDEKTHVAVGAKWFRFFCARNRIDPAARFRE........................... 238
13 -11.900[M] COG5577 Spore coat protein  ali follow..  9  11.....................LHELIVSCVNSITNMAMFRNMVQDQDLKNILNSHFPAHIQDYNMKVEFVKK.......................................... 61
14 -10.400[P] COG1528 Ferritin-like protein  ali follow..  18  3..............SQAIAEKLNEQINLEFYSSNVYLQMSAWCAHHGYEGALLRHADEEMEHMQKLFNYVSE.......................................... 63
15 -9.810[FJ] COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA  ali follow..  10  172..........RTHEPLTLIDKLICGAYIEARSCERFAALAPWL-DEDLQTFYLSLLRSEARHYQDYLALAQQISAEDISARVRYFGEVE......................... 249
16 -9.140[S] COG3685 Uncharacterized protein conserved in bacteria  ali follow..  17  3............TANEHLVAWLRDAHAMEEQAITMLTSQSSRLENPELKTRIDRHLQETKDQAAMLERCLERLDGG...................................... 67
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.