FFAS03 results for COG3477

Query: [S] COG3477 Predicted periplasmic/secreted protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200`
#	Score	Template	Links and tools	%id	First	`MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIEIIRRDLRNRITHEPDPEIPLGSNR`	Last
1	-99.000	`[S] COG3477 Predicted periplasmic/secreted protein`	`ali`	100	1	`MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSPVDMFNAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWVGVTHIIFSIVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDLPWYENVSEIFGHLVWFWSIEIIRRDLRNRITHEPDPEIPLGSNR`	204
2	-14.100	`[S] COG5446 Predicted integral membrane protein`	`ali follow..`	15	6	`MSFFRNI------VFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVPAHEHNDEAWAPADGFERTAYTVA-----------ANVLTAIGYALVLTGLISLRGT---NTGWREGLLWGVAGFAAVM--LAPMIGLPP---ELPGSPAAALEARQIWWLATVAATAGGI..................`	166
3	-8.210	`[M] COG1970 Large-conductance mechanosensitive channel`	`ali follow..`	14	14	`.....................................................................................................GNVVDLAVGVII------------------GAAFGKIVSSLVADIIMPPLGLLIGGIDFKYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAALTEIR`	126
4	-8.180	`[C] KOG0766 Predicted mitochondrial carrier protein`	`ali follow..`	8	1	`MSEIKKTEKLGVKSSKHLAAGALGGFISSTTLQPLDLLKTRCQQSQRDSLPKMVRRIILHEGGVFSLWKGTLPSSTTGSSCYFYFLNWLRHFAPQSKNIASSHIQNLWMGGFARAAVGFAFMPVTVIKV-SGFFRGFGVTAL----DAPHAGLYFSPSSSVQGTVPHRNIVNVMSGLISGATATAITN----------PFDMLK`	235
5	-7.610	`[S] COG4244 Predicted membrane protein`	`ali follow..`	14	19	`.......................................................................................................IVHFVIGMVFFAYISELVGYLQKKPRFFEVAWWNWLTAAIAIFFAVIFGEFEAALAMPYPAAQPALDWHTVNGWSLSAILAGL..................`	101
6	-7.410	`[C] KOG0760 Mitochondrial carrier protein MRS3/4`	`ali follow..`	12	1	`MNIDDYESLPTTSVGVNMTAGAIAGVLEHVVMYPLDSVKTRMQSLSPPTKNMNIVSTLRTMITREGLLRPIR-SAVVLGAGPAHSLYFAAYEMTKEKFTSVRNLNYVISGAVATLIHDAISSPTDVIKQ-KAFYRAYGTQLVM---NLPYQTIHFTTYEF--LERKYNPPVHMAAGAAAGACAAAVTT----------PLDVIK`	223
7	-7.400	`[S] COG4852 Predicted membrane protein`	`ali follow..`	13	54	`..........................................................................................................YVVGVTFFVLVPGTEKGSLGYTILAGALFGLVCYATYDLTNLATLKDWP----------ITMTIIDLVWGTAVTTVTSVIVYFINL............`	129
8	-7.390	`[S] COG4317 Uncharacterized protein conserved in bacteria`	`ali follow..`	14	11	`.......................................................................................................LLSLGAGLLVGVIYSLLNVRSPAPPVIAGILVG--------EQAVPLVKRLMSGNPVNISWFNSHCIPHVF..............................`	78
9	-6.920	`[F] KOG0036 Predicted mitochondrial carrier protein`	`ali follow..`	10	176	`...FTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRLKVLMQVHASRSNNMGIVGGFTQMIREGGARSGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHERLVAGSLAGAIYSGMLDCARRILAREGVA-GYVPNML----IIPYAGIDLAVYETAVNSADPGVFVLLACGTMSSTCGQLAS----------YPLALVR`	402
10	-6.880	`[H] COG0171 NAD synthase`	`ali follow..`	6	35	`.........QTYPFIKSLVLGISGGQDSTLAGKLCQMAINERLPYGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVV-VGTDHAAEAITGFFTKYGRQGKQLLAALACPEHLYKKAPTDEVALGVTYDNIDDYLEG-VARTIENWYLKTEHKRRPPITVFDDFW`	273

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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