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Query: [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTARRATDMVQPLGYLKETASQTAGPYVHIGLTPNFVGINGVFAEDLGTGPLYNDKAHGERITIKGRVIDGMGAPLRDALVEIWQADAAGLYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRLMAPHVTLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHRMRVPTLIGQREGDVYHFDIHLQGEKETVFFDILast
1 -98.900[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit  ali  100  1MKTARRATDMVQPLGYLKETASQTAGPYVHIGLTPNFVGINGVFAEDLGTGPLYNDKAHGERITIKGRVIDGMGAPLRDALVEIWQADAAGLYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRLMAPHVTLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHRMRVPTLIGQREGDVYHFDIHLQGEKETVFFDI 214
2 -10.200[P] COG5266 ABC-type Co2+ transport system, periplasmic component  ali follow..  15  159..............................................EIVPLDNPANIHVGERFKV--RVL--RGEPLPNATVTA-------TFDGFDTSDRSKTHKTEAQAFSDSTDDKGEVDIIPLRQGFWKANVEHKTDFPDQSVCQKQANYSTLTFQI..................................................... 263
3 -9.020[S] KOG3306 Predicted membrane protein  ali follow..  17  30.....................................................PCSSGSEDSYTITGRVKIPHIAKFSNVKVIL-----------------------NGGQKITFLRPDGYFTFHEVPAGTHLIEVSGYFFSPVRVDVSARH.............................................................. 113
4 -7.330[M] COG4932 Predicted outer membrane protein  ali follow..  11 1225..ETLVRENLVTDDNGEISVADLAPGDYKLIKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVSATNAELADATFELRNESDT--------------------RENLVTDDNGEISVADLAPGDYKLIETKAPAGYVNFTIDFNQSEAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADL 1431
5 -7.080[O] KOG0894 Ubiquitin-protein ligase  ali follow..  20  26........................................................................DAKPATENILE-WHYIITGPPD--------------------TPYEGGQYHGTLIFPPDYP-----FKPPAIRMIT.................................................................. 75
6 -6.880[R] COG2351 Transthyretin-like protein  ali follow..  12  4................................................................LTTHVLDTAGTPGKDLAITLFKIVN-NLRQPIKTVRTNHDGRCEAPLLEGEALQAGIYELD-------------------------------FAVGDYYRAAGVSLPDPAFLDVVT-----LRFGVADAGAHYHVPLLVSPWSYSTY... 114
7 -6.740[O] KOG0425 Ubiquitin-protein ligase  ali follow..  11  1................................................................MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLHNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRTKMWHPNIYENG--DVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS........................ 126
8 -6.550[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  17  37.........................................................DNNVTATVHGATYADTLELLNDTVISI-NSTPSQSMV----------------------AKDGIYSF-ELAPGDY.................................................................................. 88
9 -6.430[S] COG3656 Predicted periplasmic protein  ali follow..  11  39...............................................AEAATSSKAWASGMQLDIQFSVATKASGRVKRPFVAVWIEDESGKTVRT-----TRDNGQLVSTVSSATRNPGTYAVALAPQGDYGREHGPYGLVRQKVSVGTSAFKKSLGADGDIEA................................................. 188
10 -6.380[O] KOG0426 Ubiquitin-protein ligase  ali follow..  10  1....................................................................MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRCEMFHPNIYPDG--RVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS........................ 122
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;