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Query: [R] COG3541 Predicted nucleotidyltransferase, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRVDVEKRTILIGLAGSHGYGLNRPDSDLDFRGVFIAPKRYYLGFDHIEQKDAGWDEPGIFPLLDGNKDTVIYELRKILQLLSGANPNVLELLWLNEYPVLTDVGQYLINHRKLFLSKKVKHTYSGYAFAQIKKMETHRKWLLNPPEKKPLPSDFGIEDEAPLIKDDLNAFLEYLYTLIRGRIEFLEEAEQLYKLLTADIDFKGVLKQYTLPDETLEYTQNLTNSRKDFIRLLQKSQNYQIALREWKAYLSWQENRNPARAEMERKSGFDLKHGMHCIRLLRSGLEILKTGEITVDRRVAGDVEDLKAILQGEYSYQQVMEMADDLVAQMDAAYEHSTIPHRPDLEAINNLCMELVEMQGWLast
1 -144.000[R] COG3541 Predicted nucleotidyltransferase  ali  100  1MKRVDVEKRTILIGLAGSHGYGLNRPDSDLDFRGVFIAPKRYYLGFDHIEQKDAGWDEPGIFPLLDGNKDTVIYELRKILQLLSGANPNVLELLWLNEYPVLTDVGQYLINHRKLFLSKKVKHTYSGYAFAQIKKMETHRKWLLNPPEKKPLPSDFGIEDEAPLIKDDLNAFLEYLYTLIRGRIEFLEEAEQLYKLLTADIDFKGVLKQYTLPDETLEYTQNLTNSRKDFIRLLQKSQNYQIALREWKAYLSWQENRNPARAEMERKSGFDLKHGMHCIRLLRSGLEILKTGEITVDRRVAGDVEDLKAILQGEYSYQQVMEMADDLVAQMDAAYEHSTIPHRPDLEAINNLCMELVEMQGW 362
2 -7.790[R] COG1669 Predicted nucleotidyltransferases  ali follow..  19  14ISLFLQKEGATKVAVFGSYARGEEKPESDIDI--VEFSETKGLLTLVRIEREL--------SELLRLKVDLLT-SISPYLIDGIKREAKVI............................................................................................................................................................................................................................................................................... 96
3 -5.480[K] COG1318 Predicted transcriptional regulators  ali follow..  18  88.......................................................................................................................................................................................................................................................................................KLVRETYEMMKRGELNIEEVEKEELEKITDIKKLEEEIEKLKKENEELAAKLEKV-----------KEKLKEVLSELEK.... 163
4 -5.210[S] COG1665 Uncharacterized protein conserved in archaea  ali follow..  15  118..............VTGSRLIGLEGGDSDVD---FIVYGRWWFEARERLKGGIERKELSEPDDATWDFIVFVTHERRKYHRAFLGSTYFDLLYVRDYDELSRNVPEDMGVKKGKVEISAVVKDDSLVFDYPGYYPIEHPE.............................................................................................................................................................................................................................. 251
5 -5.140[J] KOG2553 Pseudouridylate synthase  ali follow..  9  39.EKKPKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLF---DAFVKAGAVSSY-NADDPKKVALARAARTDKGVHAAGNVISLLIMEDEKLIEKV------------EHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPIN---KENINQLSRSLFYEEGKEFWDDYDIAAKEILSLYEQDPEGFVNPYSKRGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPDSVEDESAGSKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSF. 381
6 -5.130[R] KOG2934 Uncharacterized conserved protein, contains Josephin domain  ali follow..  7  37..................................................................................................................................................................................................................................................................................ALHALNNVFQDSNAFTRDTLQEIFQRLSPNTMVTPHKKGNYDVNVIMAALQTKGYEAV--WDKRRDVGVIALTNVMGFIMNLKRQHWI 141
7 -5.000[G] KOG1616 Protein involved in Snf1 protein kinase complex assembly  ali follow..  11  58..............................................................................................................................................................................................................................................................EEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNPLTRSHNNFVAILDLPEGEHQYKFFVD---------GQWTHDPSEPIVTSQLGTVNNIIQVKKT... 158
8 -4.740[R] COG4914 Predicted nucleotidyltransferase  ali follow..  12  19VAKSLNEKGVEFVLIGSPFVYNIDYDPRDVDL--VKSIGLEQLLALKTKEAEEFINEVARMVLERNIRVDYEK--IKKYATAYPEDAEGILKRL............................................................................................................................................................................................................................................................................ 189
9 -4.700[K] KOG3398 Transcription factor MBF1  ali follow..  9  85................................................................................................................................................................................................................................................................................................................KAIMQARTDKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALAKLRGK... 141
10 -4.530[K] COG1846 Transcriptional regulators  ali follow..  6  53..............................................................................................................................................................................................................................................................TDEGLLMKELAERLGVTKGAVSQLVD------RLEAKALVRRTAHPKVSRGIQVVLDKGREAYRAHADMHAAFYEELQQSFTKE------EIAIFEQCVSKLRD.... 145
FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35