FFAS03 results for COG3597

Query: [S] COG3597 Uncharacterized protein/domain associated with GTPases, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 .`
#	Score	Template	Links and tools	%id	First	`ECKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKMNDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFIPVVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTIKKLKP`	Last
1	-75.700	`[S] COG3597 Uncharacterized protein/domain associated with GTPases`	`ali`	100	1	`ECKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKMNDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFIPVVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTIKKLKP`	147
2	-36.800	`[S] COG3768 Predicted membrane protein`	`ali follow..`	13	202	`QARREISRFAAESTMIAVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFRLVLLNIAFAGASELVREVGMDWM-LSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDNDKPRLGDFRRQLIGQLKETLQKSKSSPEK..`	353
3	-9.500	`[S] COG3216 Uncharacterized protein conserved in bacteria`	`ali follow..`	11	46	`.TPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAH-LCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRA.....`	207
4	-7.580	`[R] COG2215 ABC-type uncharacterized transport system, permease component`	`ali follow..`	13	243	`......SEAWSAIVAVGLRPCSGALIVLSFALLNGVLSVFAMSIGTAITVSILATMAVTAKGIAVRYASSDSAAARISNGIEIAGALLVLLLGLVLLGAA...............................................`	341
5	-5.780	`[K] COG1405 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB`	`ali follow..`	12	165	`SIEGVVAGALYAACRITNVPRTLGEIASVTRVKKKEIGRMSRYLKLNIMPSKAEDYISRFCSKLKLSMDTRNKALEILRDA-TSGKGPTGVAAAAI-----YIASLITGERRTQRAVAEVAGVTEVTIRNRYKELTEKLKLNVE...`	311
6	-5.700	`[R] KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)`	`ali follow..`	21	146	`.........SLYVLGYGLGPIPLSETLYMVTLFFFMIFQVGCATVHNIGGLIVMRFISGILCSPSLATGGGTVADGMWSAGAVAAPVLAPLLGAAMVDAKNW.............................................`	259
7	-5.620	`[R] COG1268 Uncharacterized conserved protein`	`ali follow..`	13	8	`....LVALFVALTSVGAQISVSIGPVPL--TLQVFFVILAGLVLGPKLG--FLSILIYDILGALGIPVFAGFSGGIAHILGPTGGYIIAFPIATFIAGLG...............................................`	99
8	-5.600	`[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid`	`ali follow..`	10	9	`.................IFLYVYIEISIFIQVAHVLLVIFTSVIGMSLVRNQGFKNFVLMQQKMAAGENVSLIIAGLLLLLP--GFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLD`	151
9	-5.410	`[I] KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases`	`ali follow..`	11	95	`....................WPSSHSQFMFFFATYFSLMGCKGIGFWFGLRSRWIMNLLHWSLAVVTMYSRVYLGYHTVAQVFAGAALGGIVGASWFWVVNSVLYPFFPVIEESVLGRWLYVKDTSHIPDVLKFEYDNARAARKDM.`	220
10	-5.350	`[C] KOG4516 NADH:ubiquinone oxidoreductase, NDUFC2/B14.5B subunit`	`ali follow..`	7	42	`.............................................................SAMLGISLASVYLQNRWNKKPYYYAIVPRLLLIGAATAAGYAAGALRERHYQTR------DAVIEHYMKLHPEDFDHFNDRSGRS.`	120

FFAS is supported by the NIH grant R01-GM087218-01

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