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Query: [S] COG3601 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIPALIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPVGELANFINGIFYVLPIYYLFHWFRSTKGMVLSTAVGTLVMTGAMVIFNYFVLLPFYIKLGGLPADTDVAWLVTYTIIPFSLLKGVIVSAVFLILYSRLKKWIAKNQTVKERRKFEKRQQETSHLast
1 -101.000[S] COG3601 Predicted membrane protein  ali  100  1MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIPALIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPVGELANFINGIFYVLPIYYLFHWFRSTKGMVLSTAVGTLVMTGAMVIFNYFVLLPFYIKLGGLPADTDVAWLVTYTIIPFSLLKGVIVSAVFLILYSRLKKWIAKNQTVKERRKFEKRQQETSH 203
2 -33.600[S] COG3859 Predicted membrane protein  ali follow..  14  13.SKFNVRLLTEIAFMAALAFIISLIPN-----YGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLK--LVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAV---GISAILTAIAAFVILIIFVKKFPKLFIYSN................. 190
3 -21.500[S] COG4684 Predicted membrane protein  ali follow..  15  8.SRLQTRQITMVGLLFAVTIVLGATGLGFLPIPP-FKTTIMHIPVIIGGIVGGPIVGAITGLLFGIFSIIQAINTPL-FMNPVVSVLPRVLIGIVSYYVYKKKSEKAGVVTGIIAGSFTNTLGVLAMIYLLYIDAYAKALHIS--YSTAVKSLLLLVANGVLSAAMALVISVPIILIVKKIRR.................... 193
4 -21.300[S] COG4769 Predicted membrane protein  ali follow..  12  7.RLPLDVRDELVSLLGGMCFFLSTVEHVIPKPLPFFRVGLANLPLLISPDLLPFCAYARLVFLKVIGQALVSGTLFS---YVFVLSLAGSTASGALMYALRFVPCRYLSCVGIVMGAFCSNVIQLTLARVLVFGAG------------VWYVLPLFCALGAVSSTLLGALTGHFLSHSQWYAHLQNAACGQQDTAPPASLFF. 193
5 -18.400[P] COG0310 ABC-type Co2+ transport system, permease component  ali follow..  13  36..EESPEMKPLVAISGAYMFILSSLKMPSVTGSC--------CGNGLGAVLFGVPITAVLAAIVLLFQALFLAHGGLTTLGANDFSMGIVGPAAAVIVYRLCMKAGLSSTVGIFFAALFGDWLTYVTTAVQLALAFPIPSFTAAFTKFIVIYAYTQVPLAIAEGILTVIIWDYIKKLRPDLLLKLGVVPEEELKPYLTP.... 227
6 -17.700[S] COG4720 Predicted membrane protein  ali follow..  17  1MKNNSVKIVVATGIGAALFVIIGWL-INIPTPIPNTSIQLQYAVLALFSALFGPLAGFLIGFIGHALKDSFLYGAGSGLIGLFLAFGVKRE-------LTQGIFGNKEIIRFNIVQFLANVVVWGIIAPIGDVLVYSEPANKVFTQGIVAGLV------NALTIAVAGTLLLKLYAATRT....................... 174
7 -15.200[S] COG4732 Predicted membrane protein  ali follow..  16  1...MEYRVVAYLAVFTGLGLALAPLSFPVGPT-----FPGQHFVNGVAGVVIGPWALAVAFLISLIRNMLGLGTVFAFPGSIPGALVVWLAA-----TALRRFGKAHYAPLFEPLGT---LGLGFPAAAYVVAPLLGV-------GERFITGLIPIFIGWAASTITGSIAAFFVAVALRR....................... 159
8 -14.600[R] COG1268 Uncharacterized conserved protein  ali follow..  15  1...MKAKEVSLVALFVALTSVGAQISVSIGPVP----LTLQVFFVILAGLVLGPKLGFLSILIYDILGAL-FSGGIAHILGPTGGYIIAFPIATFIAGLGRGKVRYLTSLMGLLVIYLIGWMWLARF------------------VGFNKAFILGVLPFDIVKAATAVIIAERLQGN.......................... 161
9 -13.300[S] COG4708 Predicted membrane protein  ali follow..  12  1MKKLTIRDVADIAIVAAIYVVLTVTPPLNAISYGAYQFRISEMMNFMAFYNPKYIIGVTIGCM---IANFFSFGLLDVFVGGGSTLVFLSLGVWLFAKYSKDYLFRKDHFFFSILFSISMFTIAAELNIVAELPFFLTWFTTGIGEFASLIIGAIII.............................................. 158
10 -12.300[S] COG4241 Predicted membrane protein  ali follow..  14  3....QTRPLTEGAVFASLFAVLFVITFFVPFIAFITMW-FLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILG-----PLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLR........................ 198
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.