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Query: [S] COG3610 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLVWTIIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWMAYWTLMQMDSGTGASSLAGAFVVAILSHFFAKHKKMPITIFNVPGIVPLVPGGLAYQAVRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRAFRGRKERILast
1 -67.600[S] COG3610 Uncharacterized conserved protein  ali  100  1MDLVWTIIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWMAYWTLMQMDSGTGASSLAGAFVVAILSHFFAKHKKMPITIFNVPGIVPLVPGGLAYQAVRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRAFRGRKERI 152
2 -37.100[S] COG2966 Uncharacterized conserved protein  ali follow..  13  161....YPRWLVAFMVGLSCSCFCKLNNGGWDGAVITFFASMIAMYIRQMLAQRHLHPQINFCITAFVATTISGLMLTLPAQTPTIAMAASVLLLVPGFPLINSVADMFKGHINTGLARWAIASLLTLATCVGVVMSMTVWGLR.......... 300
3 -10.100[O] COG5264 Vacuolar transporter chaperone  ali follow..  11  136.........................................................VVVLLGSLALALYNSAGERLGQAFGVVYTLLAIFIGFYAWKLHAKRSQMIKSRSPAPMTDYWGPLIVGTALAISLIVNMSF.............. 216
4 -9.250[T] KOG2290 Rhomboid family proteins  ali follow..  11  666...ILHCLVSICFQMTVLRDLEKLAG-WHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVV---------------LFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYR. 799
5 -8.910[S] KOG4753 Predicted membrane protein  ali follow..  14  98.......................................................RTVLAAFTLLVVGTGLFVMGTFAIAQGVVFFVAGLICFIPGAYHVVYIWLAAKG........................................... 157
6 -8.860[S] KOG3140 Predicted membrane protein  ali follow..  10  132.........SIFLSILSGFLYPFPLA-----LFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEIFLRIFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE..... 291
7 -8.840[S] KOG4556 Predicted membrane protein  ali follow..  10  15...TLLSIARLVFDLIGNLWVVVVFDFVQIVLLISGLFGATQKRRPLLYT-LLSSNALSVTINVLIFLWYIGVFGEISRPYLSAGLPYSSSFFLPYCDAEFDVIRLIPFYSVEASQAILHIIFAIVTSIFSILVIVELRK............ 161
8 -8.640[C] COG3288 NAD/NADP transhydrogenase alpha subunit  ali follow..  10  404....................................LVGLAVGVGLFAWVASVAPAAFLGHFTVFVLACVVGYYVVWNVTHALHTPLMSVTNAISGIIVVGALLQIGQGSGIVTFLAFIAVLIASINIFGGFTVTKRMLEMFRK........ 511
9 -8.640[O] COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  9  174.....................................LGKDIIALGMLIEDKPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAALDPLLFATGIVAMLD--IALFMLFLALDRIRLSGIALGLAAAT................ 276
10 -8.610[S] COG4129 Predicted membrane protein  ali follow..  6  8........VKTAIAATLAIILAEWLHLEY-----AVSAGIIAILSVQNTKKGSLQLAIQRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIP--VVSSVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKI 155
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.