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Query: [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFSLSPIMDSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVDNTTNLLRLMILVALAVGIILARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADKLast
1 -85.000[R] COG3726 Uncharacterized membrane protein affecting hemolysin expression  ali  100  1MARAKLKFRLHRTAIVLICLALLVLLMQGASYFSLSHQLARSEQVEELAQTLAKQVAFSLSPIMDSGDDNIDSQKVDAILQQLTQSSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNHQIVEMIAGNSGPSGFLRMTLDTHVLATESKQVDNTTNLLRLMILVALAVGIILARTLLQGRRSRWQQSPYLLTANIPVKEEDESEDDTPEALVGQAETDHKPADK 233
2 -25.100[T] COG2770 FOG: HAMP domain  ali follow..  10  1.....MKLTLKSQAAIMATAISEAVVGLFGWSQREPIRREVMRQIKTQQTALVRESANNLRQRLDIYLGLTSPEQEAAFNASIAPAGLFDSVFLATADGTVTAVSPYREGVIGINIADRNRVGGEPVVTFAAPVHREGRIIGLIGLYLLKPNFLGDLRDMRRFRWSLLALAALIGVSVWAAMLWLLRPLGRLHAAMTQLSATDLRGIRPPGASAEIEAVSTAFRKLMDEVVRQ 353
3 -21.900[T] COG5002 Signal transduction histidine kinase  ali follow..  12  1MNKVGFFRSIQFKITLIYVLLIIIAMQIIGVYFVNQVEKSLISSYEQSLNQRIDNLSYYIEQEYKSD-STVIKDDVSRILNDFTKSDEVREISFVDKSYEVVGSSKPYGEEVAGKQTTDLIFKKIRVLISAKPVMTNQEVVGAIYVVASMEDVFNQMKTINTILASTGLALVLTALLGIFLARTITHPLSDMRKQAMELAKGNFSRKVKKYGHDEIGQLATTFNHLTRELEDA 254
4 -17.300[T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism  ali follow..  12  9.MLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRDGLANKALAVARTLADS--PEIRQGLQKKPESGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEAQRIGQPFKGDDILKALNGEALRVFTPIYENHKQIGVVAIGLELSRVTQQIDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGL-------------------EPYEISTLFEQRQAMLQSIKE. 233
5 -15.800[T] COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation  ali follow..  15  68..HGKAASRLHVRIVAMFALVAAIPAIMVAIIASITLDIGLDRWFEIRTKTIVNSSLSIADAYVSRSLYGLDRTGFLDLLNKEAVGRSLAHAALIKPDGSFVMSAQTDADFAMPEPPEGSVSSTRNIMGAIVKLREIEGLYLYTIRLVDPEVIKAQVAFALPYLSLTLIIILSAIWTGIAVADRLVRPIRQLIGAADEVATGNLDVAVPVSSDGDVASLGDTFNKMLLELKSQ 352
6 -11.300[T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain  ali follow..  5VAGWYRRMKIKDKLFVFLSLIMAVSFLF-VYSGVQYAFHVYDEQIYRKSSEVLRMSSERIEDELKKIEDVSYEIITDEQIQRILSEKYIDSIHVIDARGSEYSAGSSSSDLLQQEQEE-TLGGSDPVLISARQIRLSLNGLGMVLIQVNVKQMIRDVPKDTVIGTCFLLFFCVVLLFGRKIANSITEPIEQLVTAMKSVQHSGIEAGVSLSTQDEAGMLNRHFTVMMKRINE. 365
7 -11.000[T] COG3452 Predicted periplasmic ligand-binding sensor domain  ali follow..  10MKSPLRRLLLSPVLPILIGAGLSVMTVHTWLFLYNQVQERLKQVLTNRLTNIHEQIENQLNIHVRQSPTGTEQTDWRLDARAQAEGDGYQTIQWVDPKFVV-SLELAARQKNTILSGVVDLDQGEKGFLVYVPLFIGDRFDGFVVGVFQLDQFIGSV............................................................................ 200
8 -10.600[TK] COG4936 Predicted sensor domain  ali follow..  13  8.......................................................................NSELINKIAQDFAQATGL-AVVVVNIHGDEISELFNFTPFCQLMRQHPQHSTRAGLTDFSIPLVIAGHLVGFVDRWQADPELLNEFRNV-DYSRVIASADLLKLIVENCLKKQLNFVVIKDNPQQSEANKTTRGPTPHDSKMKKA................. 197
9 -10.300[T] COG0642 Signal transduction histidine kinase  ali follow..  10  2........KLFQRIFATFCAVIVCAIFVASFSFW-----LVQNTLAENQFNQRRTIETTLMGSIISAFRARGDAGAREILTEWKDSPV-GVYVIQGDEKKDILHRYIDSYTIERARLFAAGHPHSNLVHIEYDFFTKDWDKLQARRLPSPLLIPGLPLAPIWHLIILSFIIIVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQRDDELSHLAIQFDKMVEKLEK. 232
10 -10.200[K] COG4465 Pleiotropic transcriptional repressor  ali follow..  11  3........................................LLQKTRIINSMLQAAAGK-----------PVNFKEMAETLRDVIDSN----IFVVSRRGKLLGYSINQQIENDRMKKMENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDLILAEYGATVVGMEIL............................................................. 155
11 -9.580[T] COG3322 Predicted periplasmic ligand-binding sensor domain  ali follow..  10  3LNNFSLRWLTTLNALAVVLGFLMFYLTFKYFWSHDREVAQVLQLQQAELQRVETLLSLERKAMMADFIAKPTLEFTQSIGEHAFSSQFLDGVFIYDPEGNLVWGKKYDAATGQSSSYEHLLPDDEPYLAATARVCDSGCNKGFLIFIVRAQFANVVEQATTEEILALLFFSLVMYLVNLWVVIALIKPITTA......................................... 289

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.