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Query: [S] COG3815 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKYYLIVLISFLIFYLSIFLAPYFAYLGETSNFWKFISICLYAVYSLICHQMPQRSFFIFGHKMAVCARCFGIYTGVLVGMIIYPFIKKLDDFKIPNKWYLIIALIPMAVDGTTQLIGLRESFNELRFITGFIAGFTVVFYILPIFFEMIYKKFKLast
1 -68.000[S] COG3815 Predicted membrane protein  ali  100  1MKKYYLIVLISFLIFYLSIFLAPYFAYLGETSNFWKFISICLYAVYSLICHQMPQRSFFIFGHKMAVCARCFGIYTGVLVGMIIYPFIKKLDDFKIPNKWYLIIALIPMAVDGTTQLIGLRESFNELRFITGFIAGFTVVFYILPIFFEMIYKKFK 156
2 -11.700[O] COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  14  171..................................................HPFLGKDIIALGMLIPFYWRIPGIIEHALIVIIVTLVAYKITKSYLASSIAATFAAL-AMLDIHVAFFIALFMLFLALRLSGIALGLAAGAFAFPIL......... 287
3 -11.100[T] KOG2290 Rhomboid family proteins  ali follow..  17  660.....LFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIA-IIY-LLSGVTGNLASAIFL----PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLF-----TFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYR 799
4 -10.300[O] COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase  ali follow..  10  60.....MPIIFTVLGMFTRMYFGSYYLRHEFYHDVHPPLGKMLVGLSGYLAGYNGSWDFPSGEVYPDVKMRLFQAMFSSLCVPLAYFTGRAIGFSRLSVWLFTILVIF-ILLDSMLLFFTVSSYFCLAKCLTGLNLGCAISVKMVGLFIISV..... 252
5 -9.800[I] KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases  ali follow..  9  28.....LAWISLVPVFISLGGFVSHFLFRRELQGIFFGIGLVISQFINEFIKTSVEQA---DSHGWPSSHSQFMFFFATYFSLMGCKGIGFWFGLRSRWIMNLLHWSLAVVTMYSRVYLGYHTVAQ---VFAGAALGGIVGASWFWVVNSVLYPFFP 183
6 -9.680[O] KOG3359 Dolichyl-phosphate-mannose:protein O-mannosyl transferase  ali follow..  13  67.....MPVIFTALALFTRMYFGSYYLRHEFYHDVHPPLGKMLVGLSGYLAGYNGSWDFLLEIYPDYL--RLFNASFSALCVPLAYFTAKAIGFSLPTVWLMTVLVLF-ILLDSMLLFFTVASFFSFVMLITGISLGCTISVKMVGLFIITM..... 258
7 -8.660[S] COG4129 Predicted membrane protein  ali follow..  10  7.......TVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTKKGSL-------------------QRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIPLAVRLHVADGIVVSSVWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQK 154
8 -8.540[I] KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family  ali follow..  9  92RNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIG-----------FLDVCDRGNAERVKEGRLSFYSGHSSFSMYCMLFVALYLQARMKGDWARLLRPTLQFGLVAVSIYV-GLSRVSDYK--HHWSDVLTGLIQGALVAILVAVYVSDFFKERT. 255
9 -8.470[P] KOG1558 Fe2+/Zn2+ regulated transporter  ali follow..  14  199.........IVSQVLEIGIVVHSVII--GISLGASQSIDTIKPLMAALSFHQ---------------------FFEGLGLGGCISLADMKSKSTVLMATFFSVTAPLGIGIGGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLAT... 320
10 -8.060[A] KOG2412 Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor  ali follow..  9  322..........LAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCERMGGIFAIITRLHILARICNTPLNLITNTHFVILGSWWDAAAVQFLQAYG-NQASKLLILIGEELTKYVGAARLRILLEAWQNNNM. 530
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;