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Query: [KT] COG3835 Sugar diacid utilization regulator, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MILDSQLAQQIVDRTMAIIGYNINVMNQAGVIIGSGEKNRIGQVHDGAILALKHGDSVELTAESCVALKGVKPGINMVLRNQQQVVGIVGITGEPKDIRDFANLVKMSAEMIIEQAALVEQLQWDRRHREEFISAWIHNTLSAAELDAWAARLSIDLSKPRVAVVIAFRQPKSGQSLDQIRQVVELLEHPERDNLVAVVSMQEIVVLKPCRTPEHWTSEYESLRIDKLMARLKAYDITGYDIALGQLFINPNAIHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGEQWRRVMQELQTQDKSGQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSLLGLAELYIAYQLTSYDLast
1 -114.000[KT] COG3835 Sugar diacid utilization regulator  ali  100  1MILDSQLAQQIVDRTMAIIGYNINVMNQAGVIIGSGEKNRIGQVHDGAILALKHGDSVELTAESCVALKGVKPGINMVLRNQQQVVGIVGITGEPKDIRDFANLVKMSAEMIIEQAALVEQLQWDRRHREEFISAWIHNTLSAAELDAWAARLSIDLSKPRVAVVIAFRQPKSGQSLDQIRQVVELLEHPERDNLVAVVSMQEIVVLKPCRTPEHWTSEYESLRIDKLMARLKAYDITGYDIALGQLFINPNAIHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGEQWRRVMQELQTQDKSGQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIETNSLLGLAELYIAYQLTSYD 379
2 -65.500[TQ] COG2508 Regulator of polyketide synthase expression  ali follow..  15  192HVLSDGSVSSLASMAGRLLPDPLIVVDFTTNQIIAGRSPLPDTIDDDAWQAAASGAFAKALTKAARESRLKVAARMETLMVDKQHVGALIIFSNPATSGELDQIMLDSAKFALSVQMMRSFLRFETRTQSELFFEVVERRRDPADISQRATRLGLDFSSSQQMIVVDFPQKAKGGGSVDVQHTISRVMQQVGLAANLVAIEGGLVCLMPYETTRR--REKTGKIMQRIADELKRYFEEAPIVVASTRCAGLDDYPSAWDRCNRMISIGRSF-GLTGAVSTQDFGPLPMLVSADVSDVRSFVRESIGAMAEHDHQTPYLETLSVYLQESCRAQACADRMGLHVTTLRYRLARIQELFGIDVETPDKRFAVELAIRLHRV. 592
3 -26.900[K] COG4465 Pleiotropic transcriptional repressor  ali follow..  9  17AAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIEN-VPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAIEEEARSKAVVQMAISSLSYSEL--EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELENLKSH............................................................................................................................................................. 259
4 -12.900[S] COG3877 Uncharacterized protein conserved in bacteria  ali follow..  18  29..........................................................................................................................................................................................................................................................................................................RFRASPFDFLDKDE-----LEFVILFFRARGNLKEIERYTGQGYFALRGKLEKILEKMNLQPLGEMKEEISEEDLF..... 99
5 -10.400[KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator  ali follow..  15  1.............................................................................................................................................................................................................................................................MLEQQRNPADALTVSVLNSQSQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQ---YTRGNQTRAATMLGINRGTLRKKLKKY........................... 96
6 -10.000[T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain  ali follow..  12  38.....QAIEKALETQPDLMMMDIKMPGVDGVQAV----KEIKQQLPETEFIMVSAFDTFEYAREVMRY-GVKEYLLKPTT-KEDVLTAL---------RIVGEIEQAREEKNDQYKLQQRLEQISSFVQTESILYLLMDHIQDYEWMEWNEWLRTEQEGYAVVFSFEIRKTEKQQWHARIKKEIGLQLPKSTVGPFIGHHLPILMLT--ENENGMTKQEREQVVIQLLHKVKQAVQPAKVKTGVGG-IYRLHFFSTSYREALLALDI-IYDHKQASYYFYDKNKLIEAIKSGDGEKALQAFDHYVQAILRTTDEQSLMLLARDYVHDH-TLDDLAKHIGLSPY---YVSKLFKERFDLTFSEYVTQLRVEHAKQLLS.. 477
7 -7.030[R] COG3726 Uncharacterized membrane protein affecting hemolysin expression  ali follow..  12  72...DSQKVDAILQQLTQ---LDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYFNH---------------IVEMIAGNSGPSGFLRMTLDTHVLATESKQVDNTTNLLR.......................................................................................................................................................................................................................................................................... 168
8 -6.860[R] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol  ali follow..  19  4..LTLEVANSIINRACSTASGSVAVLDAGGHLVAGASMLRFEIAFGKAYGALAVGFGSRWLDKASADRPHFVAGLTLVRDQAGRLLGAVGITGDTSDNDE--AVAVEAIEIG........................................................................................................................................................................................................................................................................... 136
9 -6.680[S] COG5352 Uncharacterized protein conserved in bacteria  ali follow..  20  4.........................................................................................................................................................................................................................................................................................................................TDERVELLRKLWSEGLSASQIAAQL-VSRNAVIGKVHRLK.......................... 44
10 -6.650[J] COG0268 Ribosomal protein S20  ali follow..  11  18..................................................................................................................................................................................................................................................................................................TERNRFYRTRLKNITKAVREAAANGNKNAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVN...................... 84
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.