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Query: [R] COG4028 Predicted P-loop ATPase/GTPase, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIPENLKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIESYSNYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKPIKIVEFGPKGIEGVFDLVAQVVEASSSLLast
1 -91.700[R] COG4028 Predicted P-loop ATPase/GTPase  ali  100  1MVSKSIDRIELESPLVALLMPPDPERLGWKVSYYTGIAFHNQTVVVRVSGLRRTIHYYIPENLKRLTNPLRREVENFLRLVNPEPLSVDQLEEVLSSGRRIADEALSYIKGLHDFVVIESYSNYAAPTFKSLDVDVVIAVAPGKVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKPIKIVEFGPKGIEGVFDLVAQVVEASSSL 208
2 -6.550[J] COG1746 tRNA nucleotidyltransferase (CCA-adding enzyme)  ali follow..  11  2.....................................................................LKMTLKEVLESIKPKDEERKKVKLIMDELRGIAQEVIEESGEEIEVKFVGSLAKDTY-LSGDHDIDMFLAFPLSIPVEKLKSKGLEIAESIGKRLESYEISYAEYVRGVYKGYQVDIVPC................... 122
3 -6.470[J] COG3557 Uncharacterized domain/protein associated with RNAses G and E  ali follow..  24  82.....................................................................................................................VSYYCNLASPFLKYIDYDLDVKVFKGEKKLLDVEEYERHRRKMHYPKEIDHILKENVKILVDWINNEKGP..................... 158
4 -5.690[S] COG2830 Uncharacterized protein conserved in bacteria  ali follow..  10  72..............................ERVLQGIRLKSATAVNGTGLPCDDSFGIPYAIFKGTLENLENTRLKFERRICGDKASFERYQLFPARPFDEIHQELTALFAIHWANAWVSSRDKIFTPANQHQYCAVQEIEGEHYVFSRFTHWSALWD.................................................. 214
5 -5.580[L] KOG4486 3-methyladenine DNA glycosylase  ali follow..  11  32..................................................................................................................IVETEAYEDKACHSYRRTERNSAMYMKAGTCYVYRIYGRYECFNISSVEAG-----AGVLVRALEPLCGVSE-MRERRGGRVKDRDIANGPSKL 124
6 -5.520[R] KOG2030 Predicted RNA-binding protein  ali follow..  11  803...........................................MKQKYKDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEYVKPEKSAAPKNPVELDDADEVPVGGDVDVLNSLGDVVAPYQALQNYKFKVKLTPGTG---RGKAAKLALNIFAKEKSCSA-REKDLLKSIKEESLAR....................... 954
7 -5.360[L] COG1658 Small primase-like proteins (Toprim domain)  ali follow..  7  1.........................................................................................................MVEKQKINEVIVVEGRDDTAN-LKRYFDCETYETIDDRDLERLKRLEDKRGIIVFTDPDFQGERIRKIIMQAVPNAKHAFLNRDEARPKGEALNQALAEVFGG 117
8 -5.130[S] COG2306 Uncharacterized conserved protein  ali follow..  19  77....................................................................................................................RQDYYIDVAEIRVEDLYVD-LISVCGEPVTVMDIDELAAATSITADDAERAIDATLNAVEGIT............................. 148
9 -5.070[R] COG1818 Predicted RNA-binding protein, contains THUMP domain  ali follow..  11  1........................................................MLLVKTLREMEYVAASHIKDAIGDVEIEIRPSGFLGLLIVHCDESLKEKLEEIPEIETIIPVLVECEAKLDEILSKAEVVAEKVKGARTFAIRTKRRGTSLDVNLDLGDRIRELTGCEVDLNFPDKAVYVEIIGKR................ 140
10 -5.060[S] COG4990 Uncharacterized protein conserved in bacteria  ali follow..  12  135.....................................................AKYVNEAHVHDISGNDITDIITVLSTGAPVWIITTTDYHAPKNWQSVQTKEGKKKITYSMHSVVITGFDK-----------ENFYINDPHKNRAVKRAVLEEG----------WSAMGKQAIYLSKP............................ 242
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;