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Query: [H] COG4062 Tetrahydromethanopterin S-methyltransferase, subunit B, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSMIRIAPEVHLVMDPDTAVVAEEREDSILYSMDPVFERMDKLDGIAEDLLNSLSPSKPLLNSWPGRENTSYMAGIYGNAFYGIVVGLAFSGLLALIIFIQRLIEGGMLast
1 -73.900[H] COG4062 Tetrahydromethanopterin S-methyltransferase, subunit B  ali  100  1MSMIRIAPEVHLVMDPDTAVVAEEREDSILYSMDPVFERMDKLDGIAEDLLNSLSPSKPLLNSWPGRENTSYMAGIYGNAFYGIVVGLAFSGLLALIIFIQRLIEGGM 108
2 -7.120[C] KOG0559 Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit)  ali follow..  15  326........DISVAVATPKGLVVPVLRNVESMNYAQIELELANLGVKARD--GKLAVEDMEGGTF-----TISNGGVFGSMFGTPIINPPQSAILGMLTYDHRLIDG.. 428
3 -6.970[E] COG3227 Zinc metalloprotease (elastase)  ali follow..  14  371ITHAVTQYSAGLLYQGEPGALNESISDIMGAMADEIGEDVYTPGIAGDSLRSLEDPSKNRYTGTEDYGGVHINSSIHNKAAYLLAEGGVHHGVQVEGIGREASEQ... 487
4 -6.480[U] KOG3202 SNARE protein TLG1/Syntaxin 6  ali follow..  16  134....QLYQQQDVMLDGVYDTIGNIRG-------ALMGEELGQQADLLDTLDNSIETTNSKLRRGMKRLKDFTIASADSKSGCCITVLIII--LIALLVLVIVL..... 225
5 -6.330[S] KOG2654 Uncharacterized conserved protein  ali follow..  20  381.................................DPMANMIQKKRRDTAIDRGELVYPSYHGHFVPNR--------------FGIAPGYRWDGVDRSNGFEGKLAK... 438
6 -6.070[OT] KOG1308 Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein  ali follow..  15  129........ELQKAIDLFTDAIKLNPRLAILYKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLD................. 212
7 -5.930[V] COG3570 Streptomycin 6-kinase  ali follow..  15  175...........LAIDPK-GLCGDRGFDYANL----FCNLELPVVSAPGRLTRQLAIVAHEARLEPKRLLQWIIAYAGLSAAWFLGDGESPESTLAVAAIADAELRG.. 264
8 -5.840[U] KOG1691 emp24/gp25L/p24 family of membrane trafficking proteins  ali follow..  10  137.....................................SQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSWLSFGSLVVCLSVAGLFWHLKTFFE... 208
9 -5.810[U] KOG1666 V-SNARE  ali follow..  156.....................TDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLL---------LSIIILLELAILGGLVYYKFFR... 230
10 -5.720[C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes  ali follow..  13  280........DIGIAVASERGLVVPILRDTDNMSLADIEKQIAEFATRARA--GKLTMEDMSGGTF-----SITNGGTFGSMMSTPIINAPQSAILGMVSYDHRLIDGK. 394

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.