FFAS03 results for COG4066

Query: [S] COG4066 Uncharacterized protein conserved in archaea, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170`
#	Score	Template	Links and tools	%id	First	`MIRSSDIPEKMTEMQLLEMLKKEASSVHIKDIMSASVYLREDARYLPPREQKEFIERFTRAFFNRIRDIKNDKNIYQGHVDTAGLKEFIDFLDQQLSQAKTENERCFQKIARIITIYVTFVRKEPVHPVGTRFPGGFTVRREGNVFYCPVKDRQINTPGALCRFCVSIQDHDIS`	Last
1	-91.600	`[S] COG4066 Uncharacterized protein conserved in archaea`	`ali`	100	1	`MIRSSDIPEKMTEMQLLEMLKKEASSVHIKDIMSASVYLREDARYLPPREQKEFIERFTRAFFNRIRDIKNDKNIYQGHVDTAGLKEFIDFLDQQLSQAKTENERCFQKIARIITIYVTFVRKEPVHPVGTRFPGGFTVRREGNVFYCPVKDRQINTPGALCRFCVSIQDHDIS`	174
2	-7.630	`[K] COG2345 Predicted transcriptional regulator`	`ali follow..`	10	21	`ILLILLERAPVIASDIAEQLSTVGVRRHLDNLVEENLAEAANPRQLTDKGRSIFGHEYDSLAAAALATLRE-------VGGDDAVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEAFSRHGYAATVDATRNGLQLCQHH----CPISTVATEFP-ELCEA..........`	190
3	-7.490	`[R] KOG3824 Huntingtin interacting protein HYPE`	`ali follow..`	10	276	`........NTLSLGQTRAILESGIPGKSIREHNEVIGM-DAALRFLNCSLLSKEHDEISIDDILEMHRRVLGNADPVERFTPVSPEYVMEQLKDIVDWLNDESTLTIDPIERAAIAHYKLVL---VHP----FDGNGRTVETRAEYYASLHVANLGDLRPFVRYVAKHSEASI.`	467
4	-7.290	`[C] COG4802 Ferredoxin-thioredoxin reductase, catalytic subunit`	`ali follow..`	12	1	`...............................................................................MSEEEVDKVYRRLNQEVEKSGYHLNPDVEFTKELVR-------------------GLLANERRYGYWSCPCRLSADNKEEDLDIICPCYYRDP..`	74
5	-6.130	`[S] COG4855 Uncharacterized protein conserved in archaea`	`ali follow..`	16	21	`.................................................................................................................................................YVCAEQGKDTD-AVAICIVCLCTE.....`	46
6	-5.980	`[C] KOG3456 NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit`	`ali follow..`	10	1	`.........................................................MNRLLQQSVSRGPLAVRASSTITTKPPTPNQITKNNAQFDKVTHTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDGGHPALGHPKHACGYC.........`	118
7	-5.960	`[R] COG1719 Predicted hydrocarbon binding protein (contains V4R domain)`	`ali follow..`	10	1	`LLKKVAENGNCFMEALFHVLRFGFEAYG----IDNAPVVRMIGRDIGKCLSANFESNTPEALFREIATFMEFHGDCRVSVLMGDSPALQVEDDFKARVMPAIGKPLCVLREGILEGVLKEKLGKECGVLETE---------------CYGTGH------TRCLFEI........`	144
8	-5.920	`[R] KOG4602 Nanos and related proteins`	`ali follow..`	12	232	`....................................................................................................................LCNFCKHN--H----------QLKTPDGVVVCPILRHYV----PVCKYCPLNGGQQ..`	291
9	-5.910	`[B] KOG3118 Disrupter of silencing SAS10`	`ali follow..`	14	135	`..EDDEFDARMEEQEALRLQRKRLEKVSETDAAAIEELVQQISPDLPRTELLKILEAKHPEFQLFLDELNQLKPQLNEIKEKLKTYPSSQLLQAQCT---------LSTYISFLTFYFALLKDGEEHPI.............................................`	279
10	-5.900	`[S] COG4391 Uncharacterized protein conserved in bacteria`	`ali follow..`	13	1	`........................................................................................................................MAGHSIPHFQND-GGHRVIEIGVKEFMCTGASVPFDHPHKVCSYC.........`	54

FFAS is supported by the NIH grant R01-GM087218-01

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