current user: public
If you have questions about the server, please let us know.

Query: [C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein), from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MNTIWGAELHYAPDYWPLWLIYAGVVVLLMLVGLVIHALLRRMLAPKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPVALMVQVHTWCGFALLAFWVGFVLINLTTGNGRHYRVNFSGLVTRCIRQTRFYLFGIMKGEAHPFVATEQNKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQVAGLGPVMLVLHMALAIIGLLFICAHLYLCTLGDTPGQIFRSMVDGYHRHRTAPRGDKSAVLast
1 -120.000[C] COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)  ali  100  1MNTIWGAELHYAPDYWPLWLIYAGVVVLLMLVGLVIHALLRRMLAPKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPVALMVQVHTWCGFALLAFWVGFVLINLTTGNGRHYRVNFSGLVTRCIRQTRFYLFGIMKGEAHPFVATEQNKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQVAGLGPVMLVLHMALAIIGLLFICAHLYLCTLGDTPGQIFRSMVDGYHRHRTAPRGDKSAV 254
2 -73.200[C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit  ali follow..  14  1.............................................MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIRKSWWQGVWYEIRWYLF-LAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDVISTMVNGYRSHKFGKISNKER. 234
3 -55.300[C] COG2864 Cytochrome b subunit of formate dehydrogenase  ali follow..  13  2.............................................SKIEISNDTRIIRHRTPARISHWMLVICFFMTMFTGVAFFFPLGTPQIARAIHPFTGILMFFAFIYLALL------YWDHNIPEKNDIRWAKGVIEVLK-GNEHAVADNGKYNLGQKMLFWTLNLAMVTLLVTGIIMWRQYFSHYFSI--PVLRIAILLHSASAFMLFTGILVHIYMAFWVK---GSIRGIVEGWVTVRWAKKHHP... 203
4 -50.900[C] COG3658 Cytochrome b  ali follow..  12  1...................................................MKNKTKVWDFPTRLFHWLLAASLPFMWYSAKT-------GGDMLQWHTRVGLFILFLLVFRLCWGIWGSDTARF-----SRFVRGWSGIREYMKNGIPEHVQPGH-NPLGALMVVALLAAVSFQVGTGLFAADENTFLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYRVFKKLVLPMITGFKYIEGKTSIRFAG. 196
5 -24.900[C] COG3038 Cytochrome B561  ali follow..  12  2..................................................TLKGTAERWDWMSQALHWLIAVLILGLGIGGLIMGNLPKT-FWVYTAHKSTGISVLALAVLRLLWRLYVGA--------------------------KPIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARMPALVSPNETIRGVALEIHKLSFWALIGLVVLHAGAAFYHHLIQRTLARMLPRNWFSSKS........ 188
6 -9.660[S] COG5615 Predicted integral membrane protein  ali follow..  13  12........LHILGVVI-----WIGGSIVLDVILRPGSIKSMGLTQEQAARLGQAISKRFSP-------MVWISVVVVAATGVLRGARMDVLGYDALTGTTYGLILSAKLILFLAMMVIG....................................................................................................................................... 110
7 -9.280[U] KOG1607 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily  ali follow..  9  123......TDSYAKGIKDLSFV--FYMIFFTFLREFLMDVVIRPFTVYLNVTSEHRQKRMLEQMYAIFYCGVSGPFGLYIMKPMYRTYPVITNPFLFKIFYLGQAAFWAQQACVLVLQLEKPRKDYKELVFHHIVTLLLIWSSYVFHFTKMGLAIYITMDVSDFFLSLSKTLVVNIRILWSVLTEFRHEGNYVLNFATQQYKCWISLPIVFVLIAALQLVNLYWLFL---ILRILYRLIWQGIQKDERSDSDSDE. 399
8 -9.270[U] COG5058 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor  ali follow..  7  123......TNAYGKGINDLCFV--YYMIFFTFLREFLMDVVIRPFAIRLHVTSKHRIKRIMEQMYAIFYTGVSGPFGIYCMKAMYRTYPDFTNPFLFKVFYLGQAAFWAQQACILVLQLEKPRKDHNELTFHHIVTLLLIWSSYVFHFTKMGLPIYITMDVSDFLLSFSKTLYINLKILWSVLTQFRTEGNYVLNFATQQYKCWISLPIVFVLIGALQLVNLYWLFL---IFRVLYRILWRGILKDDRSDSESDE. 399
9 -8.970[S] KOG2568 Predicted membrane protein  ali follow..  5  191...................ILPLQHCITAVILLGLLEMLFWYLANFNHTGMRPLALTTWVVTIGALRKTVSRILILCVSMGFGVVKSTLGGLTSKVLLVGVTYFIASEILDIAEHVGIIDDMSGRSKLFLVLPDAFLDAFLILFTSLSKTLEQLQMKRTSVKLEIYRKFSNALAVMVVASVAWIVYEVYFKATDPFNERWQTAWTITAFWDVIAFLLLCIICYLWTPSQNSQRDANMKLMMDRYAYSGDVDEE. 428
10 -8.560[S] KOG4502 Predicted membrane protein  ali follow..  9  512.................................EVVKIKTSSTTADVTTTNKPKTVKRSSLVYQILLSLQLVIFILYFYKGAILPYP----RYVRVMEFFVIIPFIPIEYLRINWGSRG--------------------------------------NLLESTAFLALSTVLSIPIIIILVYLE--------------NYVLFIEEIFTYVMGFFVILETLLSLV------LTITFSSG............... 667
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.