current user: public
If you have questions about the server, please let us know.

Query: [R] COG4135 ABC-type uncharacterized transport system, permease component, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .
# Score Template Links and tools%idFirst MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCTRLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDKLGIGLGFTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLLGYLLWCTWRRTIPRVDGVRKPATPLLPGITLASFLPLTSVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNMDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAALALWQLLLPLIIFALTALVAKWVGYVRQGLRLast
1 -149.000[R] COG4135 ABC-type uncharacterized transport system, permease component  ali  100  1MVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCTRLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDKLGIGLGFTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLLGYLLWCTWRRTIPRVDGVRKPATPLLPGITLASFLPLTSVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNMDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAALALWQLLLPLIIFALTALVAKWVGYVRQGLR 496
2 -89.700[P] COG1178 ABC-type Fe3+ transport system, permease component  ali follow..  16  60IVLDAVRVQFGHERRLSVGDLTLNYLDRALSADLFWRPLFNTLSVAVGAISLSLLVGTVLAWLISRTDMRRWFATALIVPYMLPAWTFALAWTTLFKNRTVGGQPGWLEATGLTPGQFPITIILALHYTPFVILLFGSALRRFDS-QLEDSARILGAKRHQVALQIILPLMRPALLSSMVLIFAKCLGEFGVPYVLGPVKFEVLSTSLFRSIASRQTGV--AGVIAGSIMLIGIITLWIDARLVREARRFVTIGSKGSMNRQSRLGRMRLPAAGFAATVFRDLDTIALKTLLSSDLWTAARNTLTIVGIASVTSGILGLLVGYVVIRYLRQVTFLPYLVPGIAFAAAYLSLFAVPRLYGTVVILVLALIADQMPYASRAGISAMTQLGKDPEEAAQVAGAGWLRRMISIVIPIQKGSLVTGVLLPFISGIKGLSLFVILAVPSTDVLTTYSLRLVDYHYTQAANAVVLIIAAIAYCGTLIAQKLTRTNLAEGLG.. 615
3 -56.000[H] COG4662 ABC-type tungstate transport system, periplasmic component  ali follow..  18  2...................................................................................................................................................................................................................................................................................................LSDELIGIVLNTLYVSTIPVFISALVGTPIALFLHLVFKMAFNGLIGMPTVLLGLLLYLLLSRSGLLYTLDAVVIGHVFLILPLYIAYVLTALEAVDPRIKELAAMFNLSALKKA-SIYFREAAGGIAGAAAAAYGRAVGELGLALMLGGYRTRVLTTAIAHETMLGNWDAAIQLGVVLLAISVAISAVVTALGFR......... 212
4 -54.100[E] COG1177 ABC-type spermidine/putrescine transport system, permease component II  ali follow..  18  41....................................................................................................................................................................................................................................................................................SATLWESFSLKWYAVNDPEILRAAKNSLLVATLATLASTVLATLAALGMRGRMNGVLGLPLLVPEIVTAVATLMFFSFIGLKLSLFTILIAHIVFCIPFAYLPIRARLEGLDPRLAEAAADLYASPWKAFWKITLPLLMPGVLSGAMLAFIISMDDFVITYFVAGAGATTLPVYIFSSIRMGISPKINAISSIILMISIAFVALSYYLGQRRR....... 262
5 -51.300[P] COG4208 ABC-type sulfate transport system, permease component  ali follow..  14  52...................................................................................................................................................................................................................................................................................................GDRNFQSALQLTVVMALISVPLNTVFGLCAAWVLARLFLSVLDLPFSISPVVAGLMIVLLYGKNGWIGSWFGMAIATIFVTLPFVAREVIPVLEELGPEQEEAARTLGAKDWQIFWRVTLPNIRWGLLYGVLLTNARAMGEFGAVAVVSGSKTSTLPIFVEQEYKNYQTEAAFGAAVVLALLAVVTLVLKEILEQRTGHHKA... 275
6 -51.300[O] COG0555 ABC-type sulfate transport system, permease component  ali follow..  16  47..........................................................................................................................................................................................................................................................................................NMTFSEYWQADPRVVASYKVTVGSALIASLFNGLFGLLLAWVLVRILDALVDLPFALPTAVAGITLATLYSANGWIGSVLGIIVAMAFTSIPFVVRTVQPVLEEISREEEEAGMTLGASDAAVFWKVILPSLKPALLVGTALSFTRSLGEFGAVIFIAGYISEITSLMIFVRLQEFDFPAASAIASVVLLTSLLLLLMINLWQGAYLRSIHG.. 282
7 -48.400[P] COG4149 ABC-type molybdate transport system, permease component  ali follow..  15  53...................................................................................................................................................................................................................................................................................................TAPESLGTARLSIGTALFSTALCAIVGFPLALALHLVLTVLVYAPLVLSPVVSGLALTFLWGRRGFLGSWLAVVFAQVFVALPFFISTVTTALRGIPKQFEEIAATEGATRWEIMHKMIIPLAMPGIFTGMILGFARALGEYGATLTFAGNVTRTIPLHIELGLSSNDMDKALGAVIMLLAVYVLIIGAIGALRLFSKVRK.... 278
8 -48.300[R] COG4132 ABC-type uncharacterized transport system, permease component  ali follow..  12  55..........................................................................................................................................................................................................................................................................................NFTLQNIHDLQPQIMSAYWISIKVSFASAVGGAIIGFFLAWAVVLTVLTFSGVASNFAGVPLASAFLATLGRTGFVTILLGLTLTYLFFQIPLVVLILTPALDGLKKEWREASSILGATHMQYWRMVAFPILWPSLLGTTLLLFANAFGAIATAYALTGSSLNIVPILLYAQIRGDNQNLGYALALGMIVITGVSNLLYIWLRIRAERWQR... 297
9 -46.900[E] COG1176 ABC-type spermidine/putrescine transport system, permease component I  ali follow..  17  44..........................................................................................................................................................................................................................................................................................VIGLQNFGLNSSLFASVLYNTFKTALLVTLLSLLFAYPLAYAAANFLLTVVALSFWTSYLVRTYAWMVILGNQGPVTALLSATLAMTHALIPFMTMSLFAVMKRIDPLYVRAAENLGAHPFRAFVSVYLPLSAPGIVNGCTLVFITCLGFYVMPVLLGSPRDQMIAGIIGDQIQTLDFGLGSAISIVLLALTLAVYGLYNRFFGLDRLWAGGDR 283
10 -31.200[G] COG3833 ABC-type maltose transport systems, permease component  ali follow..  13  46....................................................................................................................................................................................................................................................................................QLDFSGSWTLDHFKRLFDEYLNWYSNTLVIALSVMVLQVTIVTLAGYSYSRYSLIFFLIIQMVPTMAALTAFYVLAMLIGALDQYWFLTAIYIGGGIPMNTWLMKGYFDTVPREIDEAARIDGAGHLRIFASIVLPLVKPMLAVQALWAFMAPFGDYLTKFLLRSPERLTIAVGLQSFISNPQQQKVALFAAGAILAALPICVLFFFLQK.......... 265
11 -31.100[P] COG4986 ABC-type anion transport system, duplicated permease component  ali follow..  8  1............................MNEILLITLAALATAGRVLGLILISIVTGWFLAYAAIKGKFENIYISIIEVFESVPVISF-FPIVLIIFVTRIGGPL------------MAADFLVFTAVVWNIWMGEYQAFKTVP-REMLEVAENYQMSFLTKMRRIFIPFSYPRIAANLFPSVSDGFFYITVSEVFSVGIHTYQTFGIGTVLDSLAASGQIRLIYVALGILAAVIIVIIGLREFSRYAVSKYTVDTDAPIIRRGRLNVKQTTRLLTLIVSVPHSEWGRLFNLTPKIMLYLLYDYLRVGVILAISFVISIFLGYYLAMIIQTLSAYPIYFPFIFAASFAFIHGVFGPFTDEVYVLSLGFVSTFYY-IFYSFWMGVKALPAEYFEVMKNLNMGYFSRMRSIILPGTFPYLISGISSTINSAWGGLMIGEYWPDIVHFGLMKFIDVETNAGNIALAGWGSFIFGIVVAVYSILFTRRMMDLARKRYVAE 535
12 -23.400[G] COG1175 ABC-type sugar transport systems, permease components  ali follow..  13  64.LIETLRQAFYNVVDGQRVFVGLANFEALFGDPDFWNALKNNVIFFLIHMLVQNPIGIFLAAMLSLPRFSAFYRTALFLPTLLSFVIVGFIWKLILSPIGVAPWMMDLVGLKWAFALVTVSLVSVWQFVGIPMMLIYAALLNI-PEEIVEAAECDGITGWSQFFKIKLPLILPSIGLISVMTFVANFNAFDLIYSMQGAATDILGTFLYRFGFQLQLGNPSMGATIAAVMFLIILAGVSLYLFGIQR......................................................................................................................................................................................................................................................... 332
13 -22.700[P] COG0581 ABC-type phosphate transport system, permease component  ali follow..  17  71.......................................................................................................................................................................................................................................................................................................IMGALLGTLWLMLVVTPVTMFLGVGTAIYLESFIETNISNLAGVPSIVFGLGLTVFVRTMDLGSVVLAGGLTMSLLVLPIVVVASQEAIRAIPSHLSEASFGLGATKWQTIKNIILPAALPGILTGAILSLSRAIGETAPLIVLGIDRFTILPVQIYYWTIDSAANLAAATIIILLLVLFLLNSTAIIIRNKFQKR..... 293
14 -22.100[P] COG0573 ABC-type phosphate transport system, permease component  ali follow..  13  61.......................................................................................................................................................................................................................................................................................................VLAAIWGSIYTSLIAVLISLPLSISYAIFIVEALIVLSDVMAGLPTVIYGIWGITFLVPFVTGFSYLSAGILLGIMVTPFAAALIREAYQMVPFTYKEAIYSLGATKLEAA-RVLIGYIKPAIISSLILAFGRAIGETAAVSLVVGNTFYTISSLIANQFGNAMTPALFAAGLALLVIGLTVNMAGMYMLRRWERNVK... 303
15 -21.200[P] COG3639 ABC-type phosphate/phosphonate transport system, permease component  ali follow..  10  66.....................................................................................................................................................................................................................................................................................................PIQLPLIWETLQLAVAATLLSVMVATILAFLAASAVRTFVTFLRTMPELAWAVMFVMAFGIGAIPG-----FLALALHTIGSLTKLFYESLETASDKPVRGLAACGASQLQRMRFALWPQVKPIFLSYSFMRLEINFRQSTILGLVGAGG---IGQELMTSIKLDRYDQVSITLLLIIIVVSLLDYTSGKLRKRVVEGA.... 266
16 -21.100[P] COG2011 ABC-type metal ion transport system, permease component  ali follow..  14  25.....................................................................................................................................................................................................................................................................................................TAIYLTLYMTVLSFIIGGFLGLVAGLFLVLTVFWILDKITSIFRAVPFIILLAILSPLSHLIVKTSGPNAALVPLSFAVFAFFARQVQVVLAELDGGVIEAAQASGATFWDIV-GVYLSEGLPDLIRVTTVTLISLVGETAMAGAVGAGGIGNVAIAY---FNRYNHDVTILATIIIILIIFAIQFLGDFLTKKLSHK..... 230
17 -20.800[G] COG4209 ABC-type polysaccharide transport system, permease component  ali follow..  12  35LILFFYIPVFGNVVAFNSKWVGLDNFRFLFSSRDAFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRMVKIFQTSMLFPYFLSWVIISFFTDAFLNIKGVFNHLLESLGLK-GIWPYLLLFLGIWKGFGYSSVMYYATIMGIDP-TYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRDFGLFYQIGQLYNVTNVLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILSNLLARR......................................................................................................................................................................................................................................................... 311
18 -20.300[E] COG4176 ABC-type proline/glycine betaine transport system, permease component  ali follow..  12  117.......................................................................................................................................................................................................................................................................................................VWDESMTTLSLISTAIVISTVIGIPVGIWCAIVVRPVLDIMQTTPTFVYLVPVVMLFG----VGTVPGEVAVVIAAAPP-LIRFTNLGIRMVETEMVEAGLAFGADRRQLLWEIQFPLAIPTILGGLNQTVLTAMVMSVVVAMIGAEG---LGLVVLQGLGRLDVGRAAVGGIAIILLAMILDRITQKLAMPATSKAKRSF 315
19 -20.300[E] COG1174 ABC-type proline/glycine betaine transport systems, permease component  ali follow..  15  36....................................................................................................................................................................................................................................................................................................QVDLLYLGQRHLMLVFTSMFFALLVGIPSGILLSRYVMQIFNVGNTLPPLAVLALAMVIIG----IGDTPAIVALFLASLLP-IVRNTYAGLCSVPASLIEAANGIGMTKWQRLRQVELPNAWPVMLSGIRIATAINVGTAPLAFLIGASS---YGELIFPGIYLNDFPTLILGATATALFALILDTLLAWFGRRLSPHT.... 235
20 -18.800[G] COG0395 ABC-type sugar transport system, permease component  ali follow..  11  56...............IFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGR------------NLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAIN--PFNLIIIKNFFQQL-PRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAVIVIATLPILAVYPFLQK.......................................................................................................................................................................................................................................................... 282
21 -16.400[E] COG0765 ABC-type amino acid transport system, permease component  ali follow..  15  23.....................................................................................................................................................................................................................................................................................................DWYIAGLGWTIAIALVGWIIALALGSLLGVMRTVYVEIFRNVPLLVQLFIWYFLVPDLLPEG--TSAYLSVVVCLGLFTAARVCEQVRTGIQALPYGQTSAARAMGFRLPQIYRHVLLPQAFRIIIPPLTSEFLNIFKNSSVASLIGLMELLAQTKQTAEF-SANLFEAFTLATLIYFTLNMSLMLIMRLVERKVAV...... 239
22 -16.100[E] COG4215 ABC-type arginine transport system, permease component  ali follow..  16  5.....................................................................................................................................................................................................................................................................................................FPLASAAGMTVGLAVCALIVGLALAMFFAVWESALVTILRGLPEILVVLFIYFGSSQLLLTLS-VSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQE--FTWYIVAAAIYLVITLLSQYILKRIDLRATRFER... 235
23 -16.100[E] COG4160 ABC-type arginine/histidine transport system, permease component  ali follow..  13  17.....................................................................................................................................................................................................................................................................................................GYRFTGVAITLWLLISSVVMGGLLAVILAVGRVSFTYIFRGTPLYVQLLVFYSGMYTLEIVKGFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQP-FTAFGIAAVLYLLISYVLISLFRRAERRWLQHVS... 233
24 -15.300[E] COG4597 ABC-type amino acid transport system, permease component  ali follow..  14  183.......................................................................................................................................................................................................................................................................................................QLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIAAVLIIGLPLLAQWLFGAALHWDVPALQGLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER... 399
25 -14.600[P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  ali follow..  12  80...................................................................................................................................................................................................................................................................................................VSGQLADHIGISLERAAIGFLLACVTAVPLGFLMEKASDFLVQTLRNTSQFAL-LPVFIIVLGIGEASKIAITFYAAVF-----LLINTIVGVKSVDPLLVKAARSMGTSDWDLFKKVIFPSAIPSIVAGARLGVKTSLFSVIAAEMLAAQS---IGYLIQHSSLMLETDRMYAGILTLTIIGLLLNYLLVAGERRATRWRGSAE 283
26 -13.800[R] COG4590 ABC-type uncharacterized transport system, permease component  ali follow..  13  416.........................................................................................................................................................................................ATDDFEAKFSLVPIAFGTLKAAAF---------------AMLFAMPIAVLGAIYTAYFMTPSMRRVVKPTIELMEALPTVIIGFLAGLW----------------------FAPFVESHLPAVLALMILLPPSTIVLGFIWSRALILIPVLIGISALILSYSGELENALF----NALVVGFAMGFAVIPTIFTIAEDAIFSVPKHLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMMGLGRAVGETMIVLMATGNTMRTLSATIAVELPESHFRILFLAALLLLTFTFAVNSLAEWVRQRLREKYRSL. 731
27 -11.500[V] COG4171 ABC-type antimicrobial peptide transport system, permease component  ali follow..  11  88................................SRLIDGSLFSIGAAVLITLIATLVGGTIGALMTKGLLSSTLNHILDTVMSIPSLLLAIIFVAFLGAG------------------FNILLAIGLALIPRFIRSVYVAVHNEVEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPST................................................................................................................................................................................................................................................................................................... 245
28 -11.300[R] COG4239 ABC-type uncharacterized transport system, permease component  ali follow..  12  134................................ARILYGTRISILFGLMLTICSSVMGVLALQGYYGGKVDLWGQRLIEVWSGMPTLFLIILLSSVVQPN-----------------FWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGIAAFLSVAILLSLLIF................................................................................................................................................................................................................................................................ 326
29 -11.200[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components  ali follow..  13  109................................PDMLAALKVDLTLSVEIVLTGALIGLILVSAYYGGLIDEAMMRITDIFFSIPALILALAIAFIIGLT------------------TNIALAFIIVWWPIYARLGRSLTLSIKNMNFIEAANAAGSSSVRNIFYHVIPGVLSPLFVQFSLDIGTVVQLFAALEFLGVVPVDPFLPELGRMMVWGESYLIFGKWWAVLIPAIFLMIFTVSVSLL............................................................................................................................................................................................................................................................ 305
30 -9.720[MU] KOG2516 Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family)  ali follow..  9  1.....................................................................................................................MRWSVLDTVLLTVISFHLIQAPFTKVEESFNIQAIHDISVFDISQYDHLKFPGVVPRTFVGAVIIAMLSRPYLYLSSLIQTSRPTSIDVQLV---------------VRGIVGLTNGLSFIYLKNCLQDMFDEITEKKKEE--EDKDIYIYDSAGTWFLLFLIGSFHLMFYSTRTLPNFVMTLPLTNVALGWGRYNAAIFLSALVAIVFRLEVSALSAGIALFSVIFKKISLFDAIKFGIFGLGLGSAISITVDSYFWCLPEVDGFLFNV---VAGYASKWGVEPVTAYFTHYLRMMFMPPTVLLLNYFGYKLAPAKLKIVS----ASLFHIIVLSFQPHKEWR------FIIYAVPSIMLLGATGAAHLWENMKV... 357
31 -9.050[P] KOG4505 Na+/H+ antiporter  ali follow..  10  1.....................................MAWSQVEISKPHLAYAIIGGFTSLFML--------CSLIIKEKLFLGEATMATATGLIFGPYVA--------LFVPTSWGNTDYITEELARVLLVVEVFAAGA-ELPRAYMLRHWRSM-------FVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAACITATDPVLASSIVGKGKFARRVPGHLRNMLLMAIPFLYLAIYLIIEKPARHAGRDW-------------------------------------------VCIIILYECTFGCVLGAIIGVIARKMIKGLMDRESFLVFYFVLALFCGGIGTIIGVDDLLVSFCGAAFSWLLNLSFFVYVGAIMPWPQFHMPHMDLS---------VVLAICILIARRIPAVLLFKSFVPDIINWREALFAGGVGALYTCLVARAELEVHSTVPEPNDAIENVMWPVVCFLVLSSI............ 424
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.