current user: public

If you have questions about the server, please let us know.

Query: [E] COG4177 ABC-type branched-chain amino acid transport system, permease component, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530
# Score Template Links and tools%idFirst MAVTVSRESDSVATPTQRALKEAFYAGAIALGLFVLFIGLKTGQNMSNELVLTQRWGLLAAVVIATAVGRFLYVAYGQPFMANQKIANVATGLLPASVGSRFFTLPAFIVAVVAAVVLFVFNNSLAGWVGAEPAGYLQFLRALAIIYLLACVIYYFRAFIHANFTKLGITALVLYPILVVAVLSLNAWSIAGGLQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYALGAYAYALLATHYGLSFWILLPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLAFGEIIRLVLINWREVTNGSAGISGIPKVSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLYYLILGLCLLTAFVTIRLRRLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFFAARQGFVSPESFVFLESAIILAIVVLGGMGSLVGIAVAAMVMIGGTEALRELDFLKQIFGPDFTPELYRMLLFGMAMVIVMLWKPRGFVGSREPTAFLKERRAVSSSFTKEGHGLast
1 -179.000[E] COG4177 ABC-type branched-chain amino acid transport system, permease component  ali  100  1MAVTVSRESDSVATPTQRALKEAFYAGAIALGLFVLFIGLKTGQNMSNELVLTQRWGLLAAVVIATAVGRFLYVAYGQPFMANQKIANVATGLLPASVGSRFFTLPAFIVAVVAAVVLFVFNNSLAGWVGAEPAGYLQFLRALAIIYLLACVIYYFRAFIHANFTKLGITALVLYPILVVAVLSLNAWSIAGGLQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYALGAYAYALLATHYGLSFWILLPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLAFGEIIRLVLINWREVTNGSAGISGIPKVSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLYYLILGLCLLTAFVTIRLRRLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGFAGSFFAARQGFVSPESFVFLESAIILAIVVLGGMGSLVGIAVAAMVMIGGTEALRELDFLKQIFGPDFTPELYRMLLFGMAMVIVMLWKPRGFVGSREPTAFLKERRAVSSSFTKEGHG 531
2 -37.100[E] COG0559 Branched-chain amino acid ABC-type transport system, permease components  ali follow..  19  3......................................................................................................................................................................................................VQLFNGISLGSILLLIALGLAITFGMMRVINMAHGELIMVGAYATYVVQLLFDLYFLLAVPLSFVISALIGILIELTVIRHRPLDSLLATFGVGLILQQTAR------------------TIFGAPNVGVQSPSFLRGGLEIAGVTLPFSRLFIITLVLVSFCLLAWF--FYKTRNGRKIRGVMQNRSMATCLGISTRKVDVMTFAIGSGCAGLAGAALTLLGP-IGPT-IGTYYIVDAFMVVVVGGVGMLVGTVAGALGIGMFNTLFEYW-----------TNASLGKVLVFACIILFLQWRPQGLFSLPTR.................... 294
3 -29.800[R] COG4120 ABC-type uncharacterized transport system, permease component  ali follow..  19  6........................................................................................................................................................................................................LFGALEIGLIFSLVALGVFISFRLLRFPDLTVDGSFPLGGAVCATLIAL-GWDPYSATLAATAAGALAGLATGLLNVKLK-----IMDLLASILMMIALYSINLRIMGKPNVPLIAEPTLF----------------TLLQPEWLSDYVFRPLLLVFIVIAAKLLLDWFFTTQKGLAIRATGSNPRMARAQGVNTGGMILLGMAISNALVALAGALFAQTQGGADISM-GIGTIVIGLAAVIVGESLATLAVILGAIVYRFFIALALNSDFI----------AQDLNLVTAVLVTVALVI............................... 283
4 -26.200[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components  ali follow..  20  63...................................................................................................................................................................................LVLSLAIFGMTLGGKFFSAFSLTLILQQVAIVGIVGAAQSLVI-LTAGIDLSVGAIMVLSSVVMGQFTFRYGLPAELSIICGLAVGAFCGFINGVLVSRMRLPPF-IVTLGMWQIVL-----------------ATNFLYSANETIRAQDIVQQAPILQFFGNNIRIGNAVFTYGVLAMVLLVALLWYVLNRTAWGRHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAGWALIGRIGSVSPTA-GQFANIESITAVVIGGIGSIMGMIFGALIVGVFSLGLRLIG----------TDPQWTYLLIGVLIILAVAI............................... 359
5 -24.700[R] COG4158 Predicted ABC-type sugar transport system, permease component  ali follow..  19  28...................................................................................................................................................................................ILILIVIVFSFVAPNFMTEANMMNITRQASINIVLAAGMTFVI-LTGGIDLSVGSILGVTAVIGLVTSLN-PALAEFAVPLALLAGLGMGVFNGLLVAYAGLPPF-IVTLGTYTALRYLVADGTTVINSKISFSWIGNGYLGSVP----------------------------WLVIIAFAVIAVCWFILRRTTLGTHIYAVGGNLQAARLTGIKVSLVLIFVYAASGLLSGLGGVMSASRLYSANGNL-GVGYELDAIAAVILGGTGTITGTLIGALIIATLNNGMTLMG----------VSYFWQLVIKGGVIIVAVLI............................... 315
6 -24.000[G] COG4211 ABC-type glucose/galactose transport system, permease component  ali follow..  16  21...................................................................................................................................................................................VLLILLGIIIVQDPTFLNLRNFSNILTQSSVRLIIALGVAGLL-VTQGTDLSAGRQVGLAAVISATLLQAPELPIPVVILTVCAIGAVIGLVNGLVIAYLNVTPF-IATMGTMIIVYGINS----YYDAVGGSPIAGFNETFSTFAQ---------------GFFKFGSFKLSYITIYAAVATFLVWVLWNKTRFGKNIFAIGGNPEAARVSGVNVARNLVVIYMIAGMFYGFGGMLEAGRIGSATNNL-GFMYELDAIAACVVGGVGTVIGVVTGVIIFTVINYGLTYIG----------VNPYWQYIIKGSIIILAVAI............................... 327
7 -22.600[G] COG4214 ABC-type xylose transport system, permease component  ali follow..  21  37...................................................................................................................................................................................IAIIMLFFTFTTEGAYLSARNISNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGIAAIFDVWLGWPLPLTIVVTLALGLVLGAWNGWWVAYRKVPSF-IVTLAGMLAFRIGITNGTTVSPTSNAMSQIGQSYLPAAPQGDVTRQTITAVIVLGAIYLLNDYRGVPTPVLILTALMLAGVFMATRTAFGRRIYAIGGNIDAARLSGINVERTKLAVFAINGLMVAMAGLILSSRLGAGSPSA-GNIAELDAIAACVIGGTGSVAGAVMGAFIMASLDNGMSMLD------------TFWQYIVKGAILLLAVWM............................... 386
8 -18.500[R] COG4603 ABC-type uncharacterized transport system, permease component  ali follow..  16  68....................................................................................................................................................................................................................FIFTGLSVAVAFAGLFNIGSEGQAYVGGLGAALVALALDVPWYVTMPFAVIGAAVFGAAWAFIPAWLQ------AKRGSHVVITTIMFNFIAAA---VNVLIVPGKMAPETRTFLPGGQLPKLDWLMAWFGLKLGPAPFNVSFLIALVMCFLVWVLIWRTKLGYEMRTLGVSPSAAIYAGIPYSRTVIIAMLISGGLAGMMALNPVMGASARLQVEFVGGAGFVGIAVSLMGRSHPL-GIIFSALLFGILYQGGADLS-----FEMPNITREMIVVIQGLVILFAGA................................ 348
9 -18.300[R] COG1079 Uncharacterized ABC-type transport system, permease component  ali follow..  18  19....................................................................................................................................................................................................................LVIAASGELVAESGVLNLGVEGMMIMGAVCAFAATHMTG-SPYLGILAGIASGAVFSLLFGFLTLTLVGLALTILGLGVSGMLGESFVGLPGIKLQPIVFPVLSEIPFIGPLLFRQD-----------------------LIFYMSIALVFGISWFLFKSRAGLKIRAIGDNHASAHALGINVIRTRYLAVMFGGACAGLAGAQLSLVYTPQWVENMSAGRGWIALALVVFASWRPW-RLLAGGYLFGAVTIGQLHAQAFGIGV-----PSQLLSALPYLATIVVLV................................ 282
10 -7.900[S] KOG4776 Uncharacterized conserved protein BCNT  ali follow..  10  148.SSAQKVLKKNKLNTLEQAQQN--WSK------------YIKEQDIQDELRIANKDGYVERQ-------EFLAKTRAAHEEKIREMKK........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 213

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.