FFAS03 results for COG4244

Query: [S] COG4244 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160`
#	Score	Template	Links and tools	%id	First	`MFTLNDQNLPYPDTLHPIIVHFVIGMVFFAYISELVGYLQKKPRFFEVAWWNWLTAAIAIFFAVIFGEFEAALAMPYPAAQPALDWHTVNGWSLSAILAGLTAWRGVLRVRNPLKTSLPFLMLATVFMVLVCIQIFLGSLVDWVYGLHTLPVVQATKDGIIP`	Last
1	-80.100	`[S] COG4244 Predicted membrane protein`	`ali`	100	1	`MFTLNDQNLPYPDTLHPIIVHFVIGMVFFAYISELVGYLQKKPRFFEVAWWNWLTAAIAIFFAVIFGEFEAALAMPYPAAQPALDWHTVNGWSLSAILAGLTAWRGVLRVRNPLKTSLPFLMLATVFMVLVCIQIFLGSLVDWVYGLHTLPVVQATKDGIIP`	162
2	-11.700	`[T] KOG2290 Rhomboid family proteins`	`ali follow..`	15	662	`..............LHAGILHCLVSICFQMTVLRDLEKLAGW----RIAIIYLLSGVTGNLASAIFLPYRAEVGPAGS----------QFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLIDNFAHISGFIS---GL...............`	780
3	-9.960	`[S] COG5522 Predicted integral membrane protein`	`ali follow..`	9	81	`....................SLPLQLSDLSVYLSAIMLVTKSRKLFV---FLFFVGIGSSIQALATPDLGMFSFPHIRYILFFIS-H------GSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMY...................`	193
4	-9.900	`[T] KOG2980 Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis`	`ali follow..`	11	192	`..............SHQEFWHLGMNMLALWSFGTSLATMLGASNF-------FSLYMNSAIAGSLFSLWYPKLARLAIVGPSLGASGALFGVLGCFSYLFPHAKILLFVFPVPGGAWVAFLASVAWNAAGCALRAHLGGSMM---GV...............`	321
5	-9.740	`[R] COG4137 ABC-type uncharacterized transport system, permease component`	`ali follow..`	9	126	`..............VHIGLSLFSYATLIIAALYALQLAWIDYMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSTENIDKAV-----LSIVAWFVYIVLLWGHYHEGWRGRR------VVWFNVAGAGILTLAYFGSRILQQ..................`	260
6	-8.450	`[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains`	`ali follow..`	13	211	`.............KTHGLMNMFGWGILIIVGAIVARHMKQWDPTWFYAHIALQTTGFLLGLTGVICGLVLE-----NRLKANNVSKHKGLGITILVMGVLALLARPDKQSKYRKYWNWYHHNIGRLLIILAISNIFYGIHLA....................`	337
7	-8.440	`[T] KOG2289 Rhomboid family proteins`	`ali follow..`	16	119	`..............LHAGIIHLLTNML---SLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQESISVGASGA----------LFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLVDNFAHIGGFLT---GF...............`	237
8	-8.310	`[R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)`	`ali follow..`	7	144	`..............MHFSLMHILFNLLWWWYLGGAVEKRLGSGKL-------IVITVISALLSGYVQQKFSGPWFGG------------LSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALLWIVAGMANGAHIAGLIV---GL...............`	262
9	-8.300	`[C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1`	`ali follow..`	10	16	`........FAVTAIFHMLWPVLTTGMGIYLVIIEGLWLKTRNLDYYHHARFWARLYVLNFGIGVATGLPMAFQFGLGDFFGTVLGFEGTMAFMLEASFLGIMLFGWDRVPPLIHYLATILVAIGANLSTFWILSA--NSWLQTPAGGIFVD...........`	165
10	-8.280	`[S] KOG4320 Uncharacterized conserved protein`	`ali follow..`	9	4	`............GTVAPEKCLFGAMLNIAAVLCIATIYVREENVIIKLNKAGLVLGILSCLGLSIVANFQ---------KTTLFAAHVSGAVLTFGMGSLYMFVQTILSYQMQPKIHGKQVFWIRLLLVIWCG.............................`	124

FFAS is supported by the NIH grant R01-GM087218-01

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