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Query: [P] COG4300 Predicted permease, cadmium resistance protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRCFMIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWFVAVVYLGLGIYILVENNSFDMLWTVLGLast
1 -103.000[P] COG4300 Predicted permease, cadmium resistance protein  ali  100  1MRCFMIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWFVAVVYLGLGIYILVENNSFDMLWTVLG 208
2 -18.900[S] KOG2881 Predicted membrane protein  ali follow..  14  65....FYHGFLASFSVIVVSELDKTWFIAVIMS---MRHSRLTVFSGAMGALALMTVLSACLGWITQVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQARIFIEAFSLTFVAEWGDRSQLTTIILGARENIAGVIGILGHALCTGIAVIGGKIVAQR-----ISVRTVTLIGGVVFLLFALSALFIN........... 289
3 -13.800[S] COG2119 Predicted membrane protein  ali follow..  15  16....VMSVLAISITTVALAEIDKTQLLSLLLAS--RYRKPIPIIAAIFLATLANHALAAWLGVVVADYLSPDILKWVVVSFLAMAGWILIPDKLDGEESI------STRGPFVASFIAFFMAEIGDKTQIATSILGAQYADALSWVTLGMLLANVPVVLIGKLSAD-----KMPLGLIRKVTAGLFLLMALATAF............. 199
4 -13.200[R] COG1279 Lysine efflux permease  ali follow..  11  1MFSYYFQGLALGAAMILPLGPQNAFVM----NQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSP-ALVTWGGVV-LWYGFGAFKTAMSSNIELASAEVLKQGRWKIIATMLAVTWLN--DTFVVLGSLGGQLDVEPKRWFALGTISASFLWLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDG........... 202
5 -12.700[S] COG1971 Predicted membrane protein  ali follow..  15  1.....MIHLVSLLALAFAVSLDSFGV--LTYGLRKMKIPFKSLLFIAGCSAVSILIAMGFGMTIQQYLSPAIAESLGGIILILIGCWALYQAFRPAKNKPMVADFDNSGAITGREAVILGIALSLDAFGA---IGAALIGFHPLYMAVSVAVMSALFVSLGMKSGY-RFADSYWIKRFSFIPGLLLVLIGVFNLM............. 212
6 -11.900[P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance  ali follow..  10  5ADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPGQRDRARITGLILAMIMRLLLLASISWLVTLTKPLFSVQALGFFLLFKATMELNERLEGKDSANPTQRKGAKFWAVVAQIVVLDAIFSLDSV-----------ITAVGMVDHLAVMMAAVIIAISLMLLASKSLTRFVNNH-VILCLSFLLMIGFSLVAEG........... 204
7 -11.500[U] COG2095 Multiple antibiotic transporter  ali follow..  11  2QSFEIAIFLQFFLGLVAAVNVGIMPVFVSLTGHMTLEEKNKTAATANIAVAIILIIALLAGQMLLDLF---------GLLLLSIAFSMMSGKLGEDKQNKQEKSEYISREQIAVVPLAMPLMAGPGAISSTIVYGSRYPNMLDTLGIILTVVAFSFCSWLLFRSAPVRLLGQTGINVITRIMGLILGALGIEFIANG........... 203
8 -10.700[S] COG4280 Predicted membrane protein  ali follow..  15  7............LAALGSTSVEFFEVVAIAYA-IGSSGYVKEAIWGSIVGLIAVLSVAIALGTGLQFLPLQPLQIVIGGLLLWFGWGWAKKSWIDDQVLEKEGIVLDQESTGFSKLNFLIMTKSVEALEIFV-IVITLGLATSAWYEAIAATGFALLLSLVFVIFLHPYLVKLPEVLIKLGAGIMLSAMGTFWLGEG........... 202
9 -10.200[E] COG1280 Putative threonine efflux protein  ali follow..  10  4..ALLGLFIPTFFFVSITPGMNMTLALT---GMSVGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFFKIVGAS-VYLGVQMWRSRGKLAINIEQENTYQGSDWGLLVQGFVTAIAN----MVSLLPPFIDQSLSQLTVLVAIILLSEFISMSLYATGGKG-LSQAHHVRLLNRIAGSLMAGVGIWLYFS............ 206
10 -8.610[P] COG0672 High-affinity Fe2+/Pb2+ permease  ali follow..  12  377......SLFVYSLLIIVREGLEALLIVAAIVAKNNHQDKLPLIRQSVVVALIASVLTAFIFQWLFANS-RELLEGFTMMIAVVM--KAEARNWKAYLEGKFAKSLSSGSIIGLWLTSFLAVYRGAETVLFYLALIGDANTTSGHLSVLAGFGVGCVILLVAYLVMRFTVVKLPLKPF--YLMAFVFAGKSVLELIEGKLFE....... 591
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;