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Query: [S] COG4317 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKGMTMKMYLLSLGAGLLVGVIYSLLNVRSPAPPVIALVGLLGILVGEQAVPLVKRLMSGNPVNISWFNSHCIPHVFGELPTGAAHNPVAARDEPSAREISLast
1 -62.600[S] COG4317 Uncharacterized protein conserved in bacteria  ali  100  1MLKGMTMKMYLLSLGAGLLVGVIYSLLNVRSPAPPVIALVGLLGILVGEQAVPLVKRLMSGNPVNISWFNSHCIPHVFGELPTGAAHNPVAARDEPSAREIS 102
2 -8.840[L] COG1688 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)  ali follow..  15  1......MIGYLVDVEFVWGFQARISKTSPSFYYPPPTTFLGAVAEAIAKD.................................................... 47
3 -7.380[S] COG3477 Predicted periplasmic/secreted protein  ali follow..  14  104..........VTHIIFSIVFAVGYCVVAEVFPKIKLWQ-----GLLAGMISFPLMGLTPPLFDLPWYENVSEIFGHLV........................ 174
4 -7.150[K] KOG4109 Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30  ali follow..  24  65.TSTVPTRQYLDSTVVPILLQGLGALAKDR-PENPIEFLANFL........................................................... 105
5 -7.080[S] COG3610 Uncharacterized conserved protein  ali follow..  20  48TLMQMDSGTGASSLAGAFVVAILSHFFAKHKKMPITIFNVGIVPLVPGGLAYQAVRNFVLGD........................................ 110
6 -6.920[O] COG1397 ADP-ribosylglycohydrolase  ali follow..  15  249TIESVPCAIALVELAQTDPNRCAVLCANLGGDTDTIGAMATICGALHGVNAID................................................. 302
7 -6.840[M] COG1970 Large-conductance mechanosensitive channel  ali follow..  17  7.FREFAMRGNVVDLAVGVIIGAAFGKI-VADIIMPPLGLL.............................................................. 48
8 -6.690[S] COG2707 Predicted membrane protein  ali follow..  39  101..RGVTLMGSQPQLVAGLLVGTVLGVALFRGPVGPLIA-AGLVSLIVGKQ.................................................... 148
9 -6.660[G] COG4211 ABC-type glucose/galactose transport system, permease component  ali follow..  26  110..........LTVCAIGAVIGLVNGLVIAYLNVTPFIATMGTMIIVYG...................................................... 147
10 -6.640[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components  ali follow..  28  141..........ICGLAVGAFCGFINGVLVSRMRLPPFIVTLGMWQIVLA...................................................... 178
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.