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Query: [V] COG4452 Inner membrane protein involved in colicin E2 resistance, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWKLast
1 -137.000[V] COG4452 Inner membrane protein involved in colicin E2 resistance  ali  100  1MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWK 450
2 -9.480[S] COG3308 Predicted membrane protein  ali follow..  8  6...........................................................................................................................................................................................................................................................................................KPLPEVAWLQPRLALSRAISLGSFVGLVLLILIRDLIYADAHGAASWVPWLVLAFKLLPLL---------------------VVAPGLLMGSARGHAWACYVVNLYFILGVLAAFDPTQRLFGWAEVLLSVTLFCAALLYTRWRFQYDRRVAGER............ 139
3 -9.350[U] KOG3142 Prenylated rab acceptor 1  ali follow..  16  47........................................................................................................................................................................................................................................................................................SMTLPHGFFDAISRRANYAIGVLFILFLSLLY---------HPTSLIVLSILVVFWIFLYFLRDEPLQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRLFLDEEAAAVTEASGLMSYPS................................... 188
4 -9.120[S] COG2510 Predicted membrane protein  ali follow..  9  6..........................................................................................................................................................................................................................................................................................................WQFWALMSAVFAALTAIFAKVGINSDFATLVRTFVIIGALCLFLTVTG----LFLVLSGLATGASWLAYFRALQIGDASRVAPIDKLSVVLVALFGAAFLGERMSTINWIGILLIGCGVVLVALRV.......................... 143
5 -8.920[UT] COG5130 Prenylated rab acceptor 1 and related proteins  ali follow..  8  40........................................................................................................................................................................................................................................................................................RISRPRNFSEAQSRSSNYLAIIAMLVIYALIR---------NPLLLIVIGIGVGGVYGIRKLQGADLVISNQNLYVILACVLIPLGLFASPIETIIWLVGASCVCVFGHAAF.......................................................... 155
6 -7.400[OTK] COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide  ali follow..  10  24.............................................................................................................................................................................................................................................................................................WKDDEEGYLKVKYGLEIIVTVHLSYLWLRRYSF--LHATKTLNCTLISLTMFVLAPFIFQNIPSNNWIVLGTFAFILLNMFLFAPA-EEHRKKLKRKAMIGTLILTGIALLIPFAEMKTLIMVGSLFQVISINPLTYKL.......................... 192
7 -7.270[S] COG2717 Predicted membrane protein  ali follow..  11  17.....................................................................................................................................................................................................................................................................................................QWKLWLLYTAGFVPAVWTFYLGATGLGADPVKTFEHLLGLWALRFLILTL---------------LVTPMRDLTGITLLRYRRALGLLAFYYALMHFTTYMVLDQGRRPFITIGMISLALLVPLALTSNN-RWSSL..................... 156
8 -7.250[S] COG4818 Predicted membrane protein  ali follow..  18  1.......................................................................................................................................................................................................................................................................................MSYNTSLGLSENIVAALCY--PVGWLSGLFFLLLERKNKVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMY................................................................................... 87
9 -7.130[S] COG2246 Predicted membrane protein  ali follow..  14  1.......................................................................................................................................................................................................................................................................................................................................MVGFFNTAMYFALANILVKIGVSETIAAYAAYGALMPVSFIGRLGVEWLRFCVVQTTNITIIFVVTNLSRSGHFSGWLTFAIISVLIPMLNFLLFQL-WVFAVPRQKSEDR............ 120
10 -7.110[C] COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J)  ali follow..  11  25..................................................................................................................................................................................................................................................................................................ISSRNPVHSVLFLILTFFNA-LFMLTGAEFLAMILLVVYVGAVMVLFLFVVMMLDV-YAPIGALVGLILAAELIIVLGGYTFAPKLAATVTAALGDILYTDYLYYFQISGLILLVAMIGAIVL..................................... 170
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;