current user: public
If you have questions about the server, please let us know.

Query: [M] COG4520 Surface antigen, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MLSACTTTGTRPAGGSLFGRSAQPSTPFLANLQGGIVGKSGVELDRGDQTKALEAEYKALETAPVGTPVIWTGDDVKGQVVANAPYQVGNQNCRQYSHTLTVDGRDTRVRGAACRNDDGSWSPLILast
1 -60.500[M] COG4520 Surface antigen  ali  100  1MLSACTTTGTRPAGGSLFGRSAQPSTPFLANLQGGIVGKSGVELDRGDQTKALEAEYKALETAPVGTPVIWTGDDVKGQVVANAPYQVGNQNCRQYSHTLTVDGRDTRVRGAACRNDDGSWSPLI 125
2 -9.370[S] COG3134 Predicted outer membrane lipoprotein  ali follow..  11  74..SVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYD..................................................... 143
3 -8.060[M] COG3133 Outer membrane lipoprotein  ali follow..  11  64..AIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGVQSIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSP........................................... 154
4 -6.590[Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component  ali follow..  6  83.........................................RQASPEQIKRFEEVFKNSLMQFYGNALLEYDNQ----DIRVLPSSAKPSDDRASVNMEIRDSKGTVYPVSYTMTNLAGGWKVR. 161
5 -6.500[L] COG0266 Formamidopyrimidine-DNA glycosylase  ali follow..  11  153LKAQKRAVKLALMDNAVVVGVGNIYANESLFRAGISPHRPANRLKKKECALLVETVKAVLRRATGGSTLR-SDGKSGYFQQEYTVYGRHNQPCPQCGGLVVK-GQRGTFYCPNCQK......... 275
6 -6.260[S] COG4337 Uncharacterized protein conserved in bacteria  ali follow..  11  8ILVLFAATALISGIAIVAQTSVADSGDKITATSSLKTPIVNRAITESEVLAAQKAWGEALVAISTTYDAKGKASAKALAVLFKPTLAISPRTFRT-NAAIFITGNTATTMGNV-KDDHGKLRII. 195
7 -6.250[M] COG3065 Starvation-inducible outer membrane lipoprotein  ali follow..  12  23LLSGCVTIPPAIQGTTATPLQDNLIRSAPKLFIGQEAGGTVVNVKNEPNRTRLEIASVPLDS--GARPILGEPSQGRVIAYVDGFLEPVDFRGHLVTVVGPIVGVEAGKIGMT--TGYKRWH... 152
8 -6.170[K] COG3343 DNA-directed RNA polymerase, delta subunit  ali follow..  11  9............................................QEKSELSMIEVARAILEERGRDNEMYFSDLVNEIQNYLGKSDAGIRHALPFFYTDLNTDGS-------FIPLGENKWGL.. 80
9 -6.160[S] COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold  ali follow..  13  3............................................TKAKVAALFERWNKSLLTGDPAKVVANCAPDAVLLPTLSKKVRYTQKEREDYSRTIRTGCNEALDTGTTYGWNGKNWVIT. 113
10 -6.030[S] COG3009 Uncharacterized protein conserved in bacteria  ali follow..  10  7WLAGCSSGEINKNYYQLPVVQSGTQSTASQGNRLLWVEAVPDYLAGNGVVYQTSDVKYVIANNN-----LWASPANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKV----SGEWLLN. 135
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;