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Query: [Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIEFVAENLAPIMFVSLIVFLLLGYPVAFSLAANGLLFFIIGVELAPLSDSINLSWPLLNALPERFWGVMSNDTLLAIPFFTFMGIVLERSGMAEDLLDTIGQLFGPVRGGLAYAVIFVGALLAATTGVVAASVIAMGLISLPIMLRYGYDRRIASGVIAASGTLAQIIPPSLVLIVLADQLGRSVGDMYAGALIPGLVLTGLYMGYILLMTFVKRHSMPALPLEARTLGSGVASLAIALLVACAIAYAAHVYLSPTQGENADILGATVGIIFIYLAALADRTLKINALSRLAQQVIIVLIPPLALIFLVLGTIFLGIATPTEGGAMGAVGALVMAAGKGRLNMEVVRAALASTTRLSAFVLFILIGARVFSLTFYGVNGHLWVEHLLTALPGGEIGFLIAVNVLVFFLAFFLDFFELAFIIVPLLAPAADKLGIDLIWFGVLLGINMQTSFMHPPFGFALFYLRSVAARVPYLDRVTGKMMQPVTTGQIYWGAVPFVCIQVVMVALTLMFPQMVLHYKGSGAAVDPSTIKIEVPGFGTGGGGLTLPDNGGGLGLPGGLQLPGGSPLDGGGQQPAQPNTAPQQNNPAPDLSAPPSFNLast
1 -170.000[Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component  ali  100  1MIEFVAENLAPIMFVSLIVFLLLGYPVAFSLAANGLLFFIIGVELAPLSDSINLSWPLLNALPERFWGVMSNDTLLAIPFFTFMGIVLERSGMAEDLLDTIGQLFGPVRGGLAYAVIFVGALLAATTGVVAASVIAMGLISLPIMLRYGYDRRIASGVIAASGTLAQIIPPSLVLIVLADQLGRSVGDMYAGALIPGLVLTGLYMGYILLMTFVKRHSMPALPLEARTLGSGVASLAIALLVACAIAYAAHVYLSPTQGENADILGATVGIIFIYLAALADRTLKINALSRLAQQVIIVLIPPLALIFLVLGTIFLGIATPTEGGAMGAVGALVMAAGKGRLNMEVVRAALASTTRLSAFVLFILIGARVFSLTFYGVNGHLWVEHLLTALPGGEIGFLIAVNVLVFFLAFFLDFFELAFIIVPLLAPAADKLGIDLIWFGVLLGINMQTSFMHPPFGFALFYLRSVAARVPYLDRVTGKMMQPVTTGQIYWGAVPFVCIQVVMVALTLMFPQMVLHYKGSGAAVDPSTIKIEVPGFGTGGGGLTLPDNGGGLGLPGGLQLPGGSPLDGGGQQPAQPNTAPQQNNPAPDLSAPPSFN 597
2 -106.000[G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component  ali follow..  27  1.......MTILFLFLLLFLLMFIGVPIAVSLGLSGALTILL------------FSPDSVRSLAIKLFETSEHYTLLAIPFFLLSGAFMTTGGVARRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSIVMVVYAAATETSVGKLFIAGVVPGLLLGLILMVVIYIVARVKKLPAMPRVSLREWLASARKALWGLLLMVIILGGIYSGAFTP-----------------------------------------------------------------TEAAAVAAVYSAFVAFVYRDMRLSECPKVLLESGKLTIMLMFIIANAMLFAHVLTTEQIPQSIASWVTELGLSPWMFLLVVNIVLLIAGNFMEPSAIILILAPIFFPIAMELGIDPIHLGIIMVVNMEIGLITPPVGLNLFVTSAVTG---------------MPLGATIRAALPWLMILLVFLIIVTYIPAVSLALPNWLGM......................................................................... 426
3 -35.500[R] COG4666 TRAP-type uncharacterized transport system, fused permease components  ali follow..  17  133............VLGLLIILELTRRTSGWTLPILSGVFIAYAFLGPWLPGFLNHGGYSFDRFLDGVFGVTVDVSSKYILLFIVFGAFLQMSGVGRFFIDFSFSLAGGMRGGPAKVSVISSGLMGMMNGTSAGNAVATGSLTIPLMRRVGYKGQFAAATEATASAGGQIMIPGAGAFIMAEITGIRYSEIIIAAAIPAFLYFLSVYFMVDFQAIKNGMKGLSRKELPPLKGILKQS--------------------------------------------------------------------LFIPVVLLIASLLMGYSIIRSGTVSILACLIVSWIHPRMGLKKVLGALELGMKNVIQLLAVCACAGIIVGVIALTGVGLRFSSMLLGIADANKLLALLFAMGIIILGMGMPTTAAYAVAAAVVAPGLIQIGIEPLHAHMFVFYYAVMSAITPPVALAAYAAAGVAGTDPFKTGVDAFKLGLAAF------IVPFMFIYSPAIMM.......................................................................................... 565
4 -20.500[C] COG3069 C4-dicarboxylate transporter  ali follow..  13  1MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAIMGHKVLP-STGYSATDIVEYVKILLMSRGGDLGMMIMMLCGAYMTHIGANDMVVKLASKPLQYINS-LMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIIL--PTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILV---------------------------------------------------------ICMLIASILEFLRSF-VFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVILTMLAAVTTSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVVVAVAGMAKIS--------------PFEVVKRTSVPVLVGLVIVIVATELM...................................................................................... 450
5 -16.400[GE] COG2610 H+/gluconate symporter and related permeases  ali follow..  11  1...MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAG----------VGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIP----YVGVPMAAALSVTHGFLPPHPGPTAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLG-------------------------------------------------DPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLIALG---SATVAAITAGGIAAPLIATTGVSPE---MVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGET------IKSWSMLETIISVCGLVGCLLLNMVI.......................................................................................... 438
6 -15.100[C] COG2851 H+/citrate symporter  ali follow..  14  3......AILGFVMMIVFMYLIMSRLSALIALIVVPIVFALISGFGKDLGEMMIQGVTDLAPTGIML--------LFAILYF----GIMIDSGLFDPLIAKILSFVKGDPFKIAVGTAVLTMT-ISLDGDGTTTYMITIRAMLPLYKRLGMNRLVLAGIAMLGSGVMNIIPWGEPTARVLASLKLDTSEVFTP-LIPAMIAGILWVIAVAYILGKKERKRLGVISIDHAPSSDPE--------------------------------------------------------AAPLKRPALQWFNLLLTVALMAALITSLLPLPVLFMTAFAVALMVNY-----NVKEQQKRISAHAGNALNVVSMVFAAGIFTGILSGTKMVDAMAHSTRSLIPDAMGLPLITAIVSMPFTFFMSNDAFYFGVLPIIAEAASAYGIDAAEIGRASLLGQPVHLLSPLVP-STYLLVGMA---------------GVSFGDHQKFTIKWAVGTTIVMTIAALL...................................................................................... 420
7 -14.600[C] COG1757 Na+/H+ antiporter  ali follow..  15.......LFIFMLCIIISCLFLLHVEPHIPLFLSVVMLSAAA----------LWFGFPWKSIEKGIVDGIKN-GVQPIIVLALIGILIGYSGAIPTMTVYALSFIE--PSHLLLTALFSCMIISTLVGSSLTTVSTIGVALIGVASAAGVPLEWTAGAVICGACFGDKMSPSDTTNFAAGIGEIPIRHMMGTTIPALLITVVLFYFLGSSVSADAASTDNIQQVITGIKDAANVTPWALLSPLLVVLLAMKRVSVIPVLTAGIISSGILTAIFV------------------------------SSLQAFMTALQNGTTFETDNEAAAKI-------------------INRGGLQSMMGSVSLIMIAFALGGLMEKIGLISALLEGVMKGIRSKGRLVAATVCSSIGVNLATEQYLSILIPGQSFKSLYDKRNIQRKFLTRSLEDGGTLINPLIPWGVSGAFMASALGVPVI-------------------DYIPFTFFLYISPMISILI...................................................................................... 448
8 -13.900[S] COG1288 Predicted membrane protein  ali follow..  14  9.FRIPSSYTVLFIIIAIMAVLTWFIPAGYETAKGGGV---ISGTYKTVASNPQGFFDILMAPVRGMLGVEGTDGAIQVSFFILM-GVVNKTGALDTGIASVVRKNKGREKMLIAILIPLFALGGTTYGMGEETMAFY-PLLIPVMIAVGFDSIVAVAIILIGSQIGCLASTINPFAT--GVAADAAGVSIADGMIWRVIQWVILVGMSIWFVYNYASKIEEDPSKSLVADKEEEHKELFQ----------GEDLNKRQRNVLTIFTLTFVIMILSLIPWEDFGIKFFTNINTWLTTMPILGGVIGKTMGAFGTWYF-----PEITMLFIMMGVLVAIVYR-MSEEDFFSSFLTGAGEFLGVAMICAIARGIQVIMNGGMITATILHLGETSLSSSQVFVILAYIFYLPMSFLISTSGLAGATMGIMAPLGQFSNVPA-----LVITAFQSAMISPTSAIVMGALA----------------LGRVDLGTWWKFIGKFIVMVMLVSVLLLVVATF................................................................................... 496
9 -13.900[R] COG2056 Predicted permease  ali follow..  12  5.........VVISVVVMIVLSLLRVNVILAIILAAITAGLVA-------------SLSITDTMQLLLSGMGGQANTAL-SYILLGGFIGYSGITSFLVKRLISVLKGRRAFMLLAIAGIASLS-----NVIPVHIAFIPILIPPLLL---RRGVAASLTFGLKAPYILIPAGYGLLFHSIIADEMTANGMSISIIPLAMLFPGLAMVVGLLVAIFITYGKDREPRNDAQVDEQ------------------------------------------STINETAATEEREFFSLKHVLTLLAIVAALTVQILF-----------QSLVLGALTGIILMFAFRVVPFHRGDEVMNEGVKMMGTIAFVMLIASGYATVLKETGAVEQLVASTSSSLGSHSFLI----LVLIFIGLVITSFGTIPIIAALYVPLCAAVGFSPLATAALIGTAGVLGDAGSPASDSTLGPTSGLNADGKHHH-------------IWDTCVPTFLHYNIPLIVFGLIAAMVL................................................................................. 439
10 -13.200[H] COG2978 Putative p-aminobenzoyl-glutamate transporter  ali follow..  12  26.....PVTLFIIFIVLLLIASAAGAYFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILTHTVKNFTGFAPLGTVLVSLLGGIAEKSGLISALMR---LLLTKSPRKLTTFMVVFTGILSNTASELVVLIPLSAIIFHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLITQQAAQIIHPDYVVGPEANWFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEIT----------EYKGLIWAGVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVTRS------------------LRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIATFLKEVGLGGSVLFIGFILICAFINLMISASAQWAVTAPIFVPMLMLAGYAP-----VIQAAYRIGIITPMMSYFGLIMATVIK-------------KDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLGLP-----VGPGATFYPAP.............................................................. 522
11 -11.800[P] COG0471 Di- and tricarboxylate transporters  ali follow..  10  30.MPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDASELADPAFKASKQAKWGLAGFSSTTVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPARRIGGYLMWMMVISTSLSSSMFAPNVLGLFVSKIAGVQISQWFLSFLPVGIILLIVAPWLSYVLYK------PEVTHSAEVAAWAGGELKNM------------GRLSRKEWTLIGLVLLSLGLWVF---------------------------------------------GKIINATAVGLLAVSLMLALHVVPWKDI-----TRYNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLEGDATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIMGCLTPGPGVIIYGCG-------------------VKSRDYWRLGAIFGVIYIA-MLLLVGWPILAMW................................................................................ 486
12 -11.600[P] KOG1281 Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters  ali follow..  10  14............LFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYLLLIGVIIEKWNLHKRIALKMVMMVGVNPAWL-TLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEALCIAYSSTIGGLTTITSTNLIFARYPDCRCLNFGSWFTFSF-PAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPI-----RYQEIVTLVLFIIMALLWFSRDPGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSPLITWKEFQSFMPWD---------------IAILVGGGFALADGCEESGLSKWIGNKLSPLGSPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPPPNAIVF------------------SYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTYPSWAPAMSNETMP.............................................................. 595
13 -11.200[S] COG1906 Uncharacterized conserved protein  ali follow..  11  19......SSLALLFSIAVVLILIRKVNIGLAIFVGSAILAY-----------LTLGADGLLVMLKSLANPQTIEIVVIVILAFTLGYSMEYFGMLEKVTGGLSESFGVYS-----------LLIPLLIGLLPMPGGAL--ISAVMLGPLTKMYRISPEKATLLNVWVTFWPLYPSVIIGAAVVNVDYFHFAAATF-----IGVFALTAGLTLTRGMERRFRVSRNLFDSLINLYPIAILLILSVLL----------------------------------------------------------------------------RLDLLLALVVAIAAVSIHNRAKLEDFREIFRRTVDKK--IILLVFAVMVYKSVIQNSGAAESLFTDISLGFPAPAAAFLLTLLVGFATGI---EMSYSSIALPLLTSFTGSGIVVAKNLMLVIAAGY-IGVMLSPMHLCYILTAEY----------------GTEIGKTYRQLLAIAGITAALVWIAYLV...................................................................................... 404
14 -10.400[C] COG1620 L-lactate permease  ali follow..  10  16.................LSALAALVPIIFFFWALGYTAGLATLGIALIIAVLVYRMPAEKALMSATQGAVYGLLPIGWIIVVFLYKITVKTGQFDIIRSSVLSITDDRRLQALLIAFSFGAFLEGAAGFGAPVA-----ISAALLVGLGFNPLYAAGICLIAGAIG------IPITAVEGPTGIPAMEI-------SQMVGRQLPFLSVFIPLYLIIIMSGFRKALEIWPAILVSGVSFAVVQYLSSNFLGPELPDVLSALVSMAALAVFLKWWKPKTTFRFATNPAAPAYRGGQIFKAWSPFLLLTAMISVW-AVYKLEVLGSAGTAILIAAVLSKFITAISWKDWGTVFKETVQELKLPILTIASVVGFAYVTNSSGMSTTLGMTLALTGS----MFTFFSPVLGWLGVFISDTSANLLFGNLQKVTALSVGMDPVLSVAANSSGGVTGKMISP---SIAVACAAVGLAGKE-------------SDLFRFTIKHSLFLLLLVCIITFLQHHVFMIP.............................................................................. 563
15 -9.800[P] COG3067 Na+/H+ antiporter  ali follow..  13  24.........ALLVFLIVNPFIFLANPFIAGWLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIAAHVREEVANLEVLLLLMFMVAGAFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRMHAGVGTALGGVMTMVPQN---LIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMR--------------------------------------------------------WFGYGETLPEKVRDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVI-ILATALTGVTDEHAIGKA-----ESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQSEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLINTGTNLPSVATPNGAFLFLLTSALAPLI-----------RLSYGRMVWMALPYTIVLTLIGLLCVEF...................................................................................... 495
16 -9.560[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases  ali follow..  13  1...MTSMILAVFIFLLTLVLVIWQ-PKNLSIGWSACGGAVLALIAGV-----------VNFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVSLLGAIVAAL--ANDGAALILTPIVLAMVRALHFNEKIASGFIADTTSLPFVVLVN---IVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKS--------------------------------------------------------------IPKRYDLTEVKKPVEAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKKVVKEA-----AIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDTH-GMMREALIYANVIGSDLGPKITPIGATLLWLHVLSHKGM-----------KISWGTYFKTGIILTIPTLLITLVGLYI...................................................................................... 426
17 -9.550[P] KOG4505 Na+/H+ antiporter  ali follow..  11  6.VEISKPHLAYAIIGGFTSLFMLFLGEATMATATGLIFGPYVAKLFVPTSWGNTDYITEELAR------------VLLVVEVFAAGAELPRAYMLRHWRSMFVML--LPVMIFGWLVSTGFMYALIPRLSFLESLAIAACITAT-------DPVLASSIVGKGKFARRVPGHLRNMLLAE-----------SGCNDGMAIPFLYLAIYLII--------------EKPARHAGRDWVCIIILYECTFGCVLGAIIGVIARKM-------------------------IKFSERRGLMDRESFLVFYFVLALFCGGIGTIIGVDDLLVSFCAGAAFSWDSWFSKKTEESHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLSVWR-------------LVVLAICILIARRIPAVLLFKSFVPDIINWREALFAG--HFGP-------IGVGA--LYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCFLVLSSIIV......................................................................................... 426
18 -9.460[I] COG2031 Short chain fatty acids transporter  ali follow..  29.........................PFIFCALLTFIVFIG----------AIFLTKATPLQVVGFWADGFWSLLSFSMQMALVTGHTLASSRLFKKMLSTFASGIKGPKQAILIVSIVSGIACALNWGFGLVIGALFAKVDYRLLIASAYTGFLVWHGGLSGSIPLQLASGGEGLAKQTAGVVTEAIPTSQTLFSPMNIFIIVGLLIIVPLLNMAMFPSKDEIVEVDPKLLVEPE-----------------------------------------EVVMDTSKMTPAERVENSSAVSILLSIMGFVYIGYYLKTKGFALNLNLVNFIFLFLGILLHGTPRRYLNALAEATKGAGGILLQFPFYAGIMGIMVGADADGMSLAKLMSNFFVSISTEKTFPVFSFISAGVVNFFVSGGGQWAVQAPIVMPAGQAIGVSA-----KSAMAIAWGMIQPFWALPALGIAGL------------------GAKDIMGYCLIVTVVSGIFICTGFLL...................................................................................... 457

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.