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Query: [S] COG4723 Phage-related protein, tail component, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATTNAFSLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRALSLQVPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGLQIVLGAAAIVGSFFTAGASMAAWGAALSAGGFSATTMLFSLGASMILGGVAQMLAPKPKTPEYRATDNGKQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGKVVVIGRQALast
1 -114.000[S] COG4723 Phage-related protein, tail component  ali  100  1MATTNAFSLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRALSLQVPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGLQIVLGAAAIVGSFFTAGASMAAWGAALSAGGFSATTMLFSLGASMILGGVAQMLAPKPKTPEYRATDNGKQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGKVVVIGRQA 226
2 -16.700[H] COG1977 Molybdopterin converting factor, small subunit  ali follow..  19  8.RLSNPLFFANIMTVKVLIPTPLQKF-ATIDCEAANVGQLIEALEANCPGIKARLCDEEGKPRRFNFYVNEEDIREGTDTALSAGDEVSIVPAVAGG................................................................................................................................. 109
3 -10.100[O] COG5131 Ubiquitin-like protein  ali follow..  16  3..............IKVELLGGLDLL-KALSLSLSKLGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIVLVNDQDEKEEYNLEEGDEVVFVSTLHGKTI............................................................................................................................... 99
4 -10.100[O] KOG4146 Ubiquitin-like protein  ali follow..  16  3..............IKVELLGGLDLL-KALSLSLSKLGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIVLVNDQDEKEEYNLEEGDEVVFVSTLHGKTI............................................................................................................................... 99
5 -6.070[S] COG5508 Uncharacterized conserved small protein  ali follow..  15  31........................................................................................................................................................KRPLSPAALRALKEAEERRRAEAPKDMPAELGGRGGLDPARFGDWEIKGRAID..................... 83
6 -5.980[A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain  ali follow..  297.........................................................................................................................................................................EEPFSYGYGGTGKKSTNSR-----YGDKFAENDVIGCFADFECGNDVELSFTKNGKG 353
7 -5.940[L] KOG4585 Predicted transposase  ali follow..  13  296LEESCNIYLEESVAMFIEMVATVRVIAERYQHSLETVKEVLSALLKLAADIVKPTRDDVTGISPFLVNDKRYMPYFIDCIGALDGTHVSVPPSGDVERYRGRKSEATMNILAVCNFSMKFNIAYVGVPGRAHDTKVLTYLVDSGYPTRSGYLGRYHLELFNRGGPPTNSRELFNRRHSSLRSVIER------TFGVWKAKWRILDRKHPKYEVKKWIKIVTS.... 541
8 -5.900[KT] KOG4512 Vitamin D3 receptor interacting protein  ali follow..  10  1MSNSVNISVETTCENQIR---EIGYDGTELYQPPPTLSESLAKCAARI-DFSKTSLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLSDVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQVLLSGAERL------RNAHSEQRNRNVSDFHIELLRLRQVSNAIIGDLSYRTAGSKFGMSGT.................. 204
9 -5.820[R] COG5643 Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E  ali follow..  802..................................................................................ANGNPLAYLRSIPARNLEDLIPVNNGGTPVNTGGNQGGSHGGSTGGVPSGSAFTGHAGYSPGVDTAASPAE---VGAASSVSEEPASAPAKAYEVKNVTSGARGGDSSWYVYG---IVGVLVAAGLVAFG-------FLRGGAG 932
10 -5.460[J] KOG2523 Predicted RNA-binding protein with PUA domain  ali follow..  11  2.........................FKKFTREDVHS-SSIQRTLKAKLVKQYPKIEDVIDELIPKKSQIELIKCEDKIQLYSVDGEVLELIPSLKLVHKFPEAYPTVQVDRGAIKFVLS------------------------GANIMCPGLTS----------AGADLPPAPGYEKGTIVVINAENKENALAIGELMMG----TEEIKSVNKGHSIELIHHLGD. 173

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.