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Query: [S] COG4838 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst MSAETVTGHNEKAYALLKSDAEKIRKLIEVQLENLTMPQCPLYEEVLDTQMFGLSREIDFAIRLELIDEEQGKQLLSELERKLADLHEATVRKLast
1 -66.800[S] COG4838 Uncharacterized protein conserved in bacteria  ali  100  1MSAETVTGHNEKAYALLKSDAEKIRKLIEVQLENLTMPQCPLYEEVLDTQMFGLSREIDFAIRLELIDEEQGKQLLSELERKLADLHEATVRK 93
2 -6.900[O] COG0830 Urease accessory protein UreF  ali follow..  14  149...........................................AQALAAFLQACINLLQASIRLSVTGQSGVTAIMAALEPVLGETAARAAL. 198
3 -6.280[A] COG1949 Oligoribonuclease (3`  ali follow..  18  33.............................................WIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLAL 80
4 -5.710[J] COG0268 Ribosomal protein S20  ali follow..  12  13.QTIKKTERNRFYRTRLKNITKAVREAAANG------------KNAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKI....... 86
5 -5.510[A] KOG3242 Oligoribonuclease (3`  ali follow..  18  10.............................................WIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEE............... 42
6 -4.620[R] COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain  ali follow..  17  11........STEAGQKEIATTGTGLSKLFDVQHNRFLVVYCK-YSEFYNKESSTAGNILDL................................. 64
7 -4.590[S] COG3377 Uncharacterized conserved protein  ali follow..  16  66..........................................IDQLLDAPLESVTYA---AEDLGIKVGMSGREALLKMMK............ 101
8 -4.520[Q] COG4647 Acetone carboxylase, gamma subunit  ali follow..  13  126.......................................CPDCGILLDVEA-----------------PTPWYPVIHDFEPDIEVFYKDWLGI 162
9 -4.410[R] COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger  ali follow..  14  3......................RLKAIIVRDRDGEEFLRCPRCGMVFKRRKDYIKHVNKAHGWLFGRGKPKGKRLKKKYSKLLSQ........ 65
10 -4.400[J] KOG1779 40s ribosomal protein S27  ali follow..  18  15.................EKRKHKKKRLVQSPNSYFMDVKCPGCYKI--TTVFSHAQTVVLCVGCSLCQPTGGKARLTE............... 75
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.