Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [R] COG4980 Gas vesicle protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MASGRSLLTGLFVGGIIGGAAVLLTAPSSGKQLREKMKTNYDSFEETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEIADIEEKIRQLEKTLQNLast
1 -46.200[R] COG4980 Gas vesicle protein  ali  100  1MASGRSLLTGLFVGGIIGGAAVLLTAPSSGKQLREKMKTNYDSFEETIKRLKSDGLALKDQLIKAAKESTDVIKDVGGELQTSIKKWQEEIKPHQQDLQKEIADIEEKIRQLEKTLQN 118
2 -9.970[S] KOG4744 Uncharacterized conserved protein  ali follow..  15  103.........................AKDKAYETKEKAKDTAYNAKEKAKDYAERTKDAADKAEDTKEKAKDYAEDTMDNAKEKARHAKEKVKEYGEDTKEKAEGFKETVKGKAEELGE 203
3 -9.930[S] COG3105 Uncharacterized protein conserved in bacteria  ali follow..  18  9.......LIGLVVGIIIGAVAMRFGNRRQQQALQYELEKNKAELDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAESEASNDQAPVQMPRDYSE 121
4 -9.650[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali follow..  7  382.....................................RSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVKQGITHVGQRLAA 462
5 -9.110[R] COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain  ali follow..  10  1MIVILYIAALIAAIALLVIAIYLGKTLKSTSQTMDEVAKSLEKITVEVQGITGQSQKLLDKTNTLLEDVNGKVAKV-DPVFDAVGDIGTSLLGLSQSVRELATLATNKVEQNEAKISQ 117
6 -8.950[V] KOG1962 B-cell receptor-associated protein and related proteins  ali follow..  14  97.AQRNFYISGIFLALVIRRLVNLICTQANLMAQSEASFKQAQSATAAARSLLENKNTEKAKTLIELNKLRERVQELTSDLNEAVKSQAESINREYDRLTEEYSKLQKKITIGGGGNKD 227
7 -8.320[S] COG4575 Uncharacterized conserved protein  ali follow..  8  1.......................MPRKTTANAAKDELLAEFQALVADTEKLLQSTADAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEV.............. 82
8 -8.080[S] KOG3156 Uncharacterized membrane protein  ali follow..  15  91..............................AKLRDQLLSADRSEF---HNIQNEYESVKNDLEKLRNKLREEITKTNAGFKLDLSLEKGRIREESSHHDLQIKEIDTKIEQEVTNMKM 175
9 -7.290[R] COG1418 Predicted HD superfamily hydrolase  ali follow..  18  1MVNIILLIVSALIGLILGYALISIRLKSAKEAAELTLLNAEQEAVDIRGKAEVDAEHI---KKTAKRESKANRKELLLEAKEEARKYREEIEQEFKSERQELKQLETRLAERSLTLDR 115
10 -7.280[S] COG4842 Uncharacterized protein conserved in bacteria  ali follow..  10  2..................................DMIRYEFGAIQGAATDINSTSGRINSLLDGLKSQLQPMVASWEGESSEAYSEAQLKWDRAAAELNTILATISNTVAQGAERMSD 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;