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Query: [R] COG5063 CCCH-type Zn-finger protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWAQLSYTRPESQKTDLTSLFSTDQEQNPLNDYQYQINIRELEEYYNKTILNEDNIQETSSEISSAVSFSPPKNTNAIQPGLLYDPQLMNPFLPSAHLNSTAPTTFKKKLEVQINPDYVPKSSQLPLTSQNLQQLSQQKPKNDASFSSEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHGDDNDIAVYVKAGTYCNVSSTSKQSDEKRSNGRGSAKKKNLNVKVKALQRMTWLast
1 -74.800[R] COG5063 CCCH-type Zn-finger protein  ali  100  1MWAQLSYTRPESQKTDLTSLFSTDQEQNPLNDYQYQINIRELEEYYNKTILNEDNIQETSSEISSAVSFSPPKNTNAIQPGLLYDPQLMNPFLPSAHLNSTAPTTFKKKLEVQINPDYVPKSSQLPLTSQNLQQLSQQKPKNDASFSSEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHGDDNDIAVYVKAGTYCNVSSTSKQSDEKRSNGRGSAKKKNLNVKVKALQRMTW 285
2 -33.100[R] KOG1595 CCCH-type Zn-finger protein  ali follow..  23  226..............................................................................................................................................SRAYSHDWTECPFVHENARRRDPRKYPYTCVPCPEF-RKGSCPKGDSCEYAHGVFE--SWLHPAQYRTRLCKD---ETGCA-RRVCFFAHRRDELRPVNASTGSAMVSPRSSNQSPEMSVMSPLTLGSSPMNSPMANGVPLS. 362
3 -25.000[K] KOG2494 C3H1-type Zn-finger protein  ali follow..  18  163.............................................................................................................................................................MPGAVGPKLMRSDKLEVCREFQR-GNCTRGEDCRYAHPTDASM--IEASDNTVTICMDYIK-GRCSR-EKCKYFHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGAT...... 280
4 -24.600[R] COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein  ali follow..  12  10...................................SDELVKIDNISFFNQCVLLFLESKGSHSISKPLGFTHIKSQESYISKMPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFNPVADQRVRAGVDPKSMVCALFKL-GNCNKGAKCKFSHDLNVGRRMEKKDLYEAVENGKYGWFWICPNGDKCMYRHSLPELKTNEQKRLERESLEKQPKITLEEFIETERGKLDKSKLTPITIANFAQW 305
5 -22.600[O] KOG1039 Predicted E3 ubiquitin ligase  ali follow..  30  4..........................................................................................................................................................................KQITCRYFMH-GVCREGSQCLFSHDLANSK--------PSTICK-YYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPP........................ 84
6 -21.400[R] COG5084 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins  ali follow..  13  241...............................................................................................................................................NGRCNKAEDCNLSHELDPRRIPACRYFNAPICFEFAKYGFCELGTSCKNQH---------------ILQCTDYAMFGSCN-NPQCSLYHGAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNSLESN.............. 371
7 -20.600[R] KOG2333 Uncharacterized conserved protein  ali follow..  17  21...................................................................................................................................................GNKKRKRKERGQNKRREKIHVKENNALCPAISIGNECPYKENCKFPHDVEAYLATKAPD---GDKCPIFERYGVCPAGFKCRWLHVVINADGKYELIKKPDGQFTLFTVNTGKEVQRKLRTKQLDLSKAESIISAVL. 158
8 -19.000[S] KOG4791 Uncharacterized conserved protein  ali follow..  33  4..........................................................................................................................................................................QGEDC--FFFYSTCTKGDSCPFRHCEAAL---------NETVCTLWQE-GRC-FRRVCRFRH..................................................... 54
9 -18.000[R] KOG1677 CCCH-type Zn-finger protein  ali follow..  15  28................................................................................................................................NSDMDPVRNLESLGNYTVYQDSSQCFWQHQNFTSNRENPALRKTKICDHWRRSGSCSYGDACWYAHGEDDLRKVVRIDRSNEEENERTAEIQKSPTKRASTNVKGLTV................................................. 138
10 -15.400[R] KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger  ali follow..  16  2..........................................................................................PPKKQAQAGGSKKADEKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKDLQE-KSVVCAFF-KQGQCTKGDKCKFSHDLTLERKCEKRSVYTQIVCKHFLEAGVCPGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLIERERSALGPNVTKITLES-----LAW 258
11 -14.200[R] KOG1492 C3H1-type Zn-finger protein  ali follow..  13  192...................................................................................................SDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDKCPYVHDPSKIA-THKVIPERMPDCSVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRST....... 432
12 -13.100[R] COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers  ali follow..  11  6.LNINQASGSKINTELAVPIFQSRRRHRPRQGLKRKKGFKRDDDSGGSSESSNEDMRDNIPIVSGRKKTVRLNRLQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQNDYSRFLPKRKDFEKKSQVGPVLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDRFVCLICKKYRKTPTCI----CG........................................................ 292
13 -11.500[S] KOG4020 Protein DRE2, required for cell viability  ali follow..  26  297..........................................................................................................................................................................KRKACKN------C----TCGLAEELEKEKSREQMSSQPKSAC------GNCYLGDRCAFKPGEK.................................................. 356
14 -10.400[K] KOG4218 Nuclear hormone receptor betaFTZ-F1  ali follow..  10  3.........................................................................................................................................SNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCP------VCHYG-TCESCKGFFK-RTVQNNKRYT---CI---ENQNCQQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLE. 148
15 -10.400[K] KOG3815 Transcription factor Doublesex  ali follow..  25  12.............................................................................................................................................................GGPVSQPPRAPLQRTPKC------------ARCR--HGLSWLKGHKRYCRFKD--CT-------C---EKCILIIERQRVMAAQVALRRQQANESL................................ 83
16 -10.200[O] KOG1645 RING-finger-containing E3 ubiquitin ligase  ali follow..  5  2.......................................................................PPRRSYPFSGHGGTIARFIEFGEAFGHYGEEEDEEEEDEEEAYVDYGEVQEEDEEEEEEEDSERQTREYIDVLDSPVRVSQNESEGIENQNRRMSNGNKVTLRDC-------V--FGKSGILDSIV---------------FVDTASTSGFS---SDEVEGSLRDVRKIYASRVAAVDDEAHKRILFLEAKLRSIEQKTASWSNKEVQWKITE. 205
17 -9.760[O] KOG3579 Predicted E3 ubiquitin ligase  ali follow..  12  311...GFEANGANGSKAVARTARKRKPSPEPEGEVGPPKINGEAQPWLSTSTEGLKIPMTPTSSFVSPPPPTASPHSNRTTPPEAAQNGQSPMAALILVADNAGGSHASKDANQVHSTTRRNSNSPPSPSSMNQRRLGPREVGGQGAGNTGGLEPVHPASLPDSSLATSAPLCCTLCHEFVQ---CPS---C-F-------------------PCQSIKQQGYCPSGEKCAFMQGEGDVKVKKERDS........................................ 560
18 -9.700[R] KOG4582 Uncharacterized conserved protein, contains ZZ-type Zn-finger  ali follow..  14  113................................................................................................................................................................VDDPSNFTIHDAVEC------------DGCG-LIGF----------RYKCVQCSNY---DLC---QKCELAHPEHLMLRMPTNNGPGM..................................... 176
19 -9.640[R] KOG4299 PHD Zn-finger protein  ali follow..  9  94..GAEKGDHDTSNNGPSITKLRRKVRRTYDTKDGFVAWNTLDDDFRPIVPDQERSRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSSKPLFSGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDISSNELLPTPEEYPYRYNNDYCSACHGPGNC---ETCSF-H------------------CDAW----YCN---EC......................................................... 309
20 -9.620[O] KOG1813 Predicted E3 ubiquitin ligase  ali follow..  10  32FFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSGPSKSSTTTSGAPERSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKFACFICREHTKNKKCF----C......................................................... 314
21 -9.510[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  12  654...................................NTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEIQAEVQEKESDAVKPKNQDIQGGKAAPAEALGIPDEHYLDNLCIFCGERSESFTEEGTRCDHCKQVVEISSLTEHLLTE--CDKKDGFGKCY---RCSEAH--------------KHKDCNP-KLANRCPL---CH-AHTMNLRKTHILQKAPALQPGKSSAVAASGPLGSKAGSKIPTPKGGLSKSSSRT. 921
22 -9.500[R] KOG4323 Polycomb-like PHD Zn-finger protein  ali follow..  9  26.......GADSSLPQVSAQGVVRETDSSNFDASPVASGSGISDVGPFGADFHQLQQHVQTPYGGMTMPASSSSGATSVPPEQDPSLSVSFNRLPKSASTKTKNGRIRSSRREDDNRIPFYDLDVAEGAEDDLQEDFHVEGMKTKSGRKIQRPVAYNPNATALKRKSRKVDMVTLCS------VCQRGDGCNSPH----------------QLCAEW----FCM---KC......................................................... 243
23 -9.500[R] COG5048 FOG: Zn-finger  ali follow..  18  539..............................................................................................................................................................DKYVKEMPDKTFECLFCKTFKRRYNCDH-PGCAFVRN-HDLI---RHKKSHQE--KAYA----CP----CKFNHRSRMI................................................ 631
24 -9.440[K] KOG4216 Steroid hormone nuclear receptor  ali follow..  14  1.............................................................................MNEGAPGDSDLETEARVPWSIMGHCLRTGQARMSATPTPAGEGARSSSTCSSLSRLFWSQLEHINWDGATAKNFINLREFFSFLLPALRKAQIEIIPCK------IC--GDKCEGCKGFFR-RSQQSNATYS---CP---RQKNCLSRNRCQHCR..................................................... 154
25 -9.390[R] KOG1312 DHHC-type Zn-finger proteins  ali follow..  12  104...........................................................................................................................................AMVSRAEDSKDHKSGSTEEYPYDYLLYYPAIKCSTCRIVKRSKHCSICNRCVADH--------------------------HCIWINNCQFY...................................................... 180
26 -9.290[S] KOG3790 Uncharacterized conserved protein  ali follow..  12  403................................................................................GRVPEGGLCPNVDETINSMTEGQKFIARPKEIKTTNCMNIPVTDRERIAKKLFDFVLNYSDAVRDGWRCGGEVPLAQLAALLTEEDKKLMKDQ-DGGLQT-----RNQHQIFYQATARLRKPKKAETIRKAPCSLHHPDG-CPVQEACRYEH..................................................... 567
27 -9.280[T] KOG4846 Nuclear receptor  ali follow..  8  2...SFETKPNYLLLTNPDTPLSVCTSPYYSPSGKTASIPSSEASKPEGTNGQWSHLPTGATYVTDEFSSEFQIQNGSTAAQSGNANNYADPLSHRRYFNNVNGYNHHQFYDTASQASVSSPATSVTSSLSPPDSLSNGHTTQRHHIGKAISFCKVCGDKAS------YHYSCEGCKGFFRRSRCLKQQVCEI-------------KRESRNRCQ------YCRF-KKCLDSGMSKDSVRQMKFRNAMRDDKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTF. 267
28 -9.210[V] COG3183 Predicted restriction endonuclease  ali follow..  11  175..............................................................................................................................................................EGKKILCYTTRYERNVCQ------GCGYGEI-DYVHHVKPLCEE---GSVPINAETDLICV--CA---NCHMIHSLKELQELLLANKS....................................... 279
29 -9.010[T] KOG3575 FOG: Hormone receptors  ali follow..  11  2......................................................................................................................SPLKMHVNMLQSDHALIMSSFPEPSPSSKRPTENCKVCGDRPN------DRYACLGCTVFFRRAKCMKEQNCLI-------------SCTYRNACR------YCRF-QKCFAVGMHSSAIQRRDLVGPRKISGDGEVIICENNTFLDDFASFQRTQFAEHLQYFTE. 152
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.