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current user: public |
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Query: [L] COG5142 Oxidation resistance protein, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MFNFTRQYSVKDGLITDELASHIVENLPARYASAETWKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACILAVRDTDGDVFGVFIPDYLIPAPHYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTKSFLAFGGGNGRYSLWLDGSLEYAYSSRTPAFENNPLSYRGCPDQRIQIVDIELWVLE | Last |
1 | -103.000 | [L] COG5142 Oxidation resistance protein | ali | 100 | 1 | MFNFTRQYSVKDGLITDELASHIVENLPARYASAETWKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACILAVRDTDGDVFGVFIPDYLIPAPHYFGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTKSFLAFGGGNGRYSLWLDGSLEYAYSSRTPAFENNPLSYRGCPDQRIQIVDIELWVLE | 188 |
2 | -71.100 | [L] KOG2372 Oxidation resistance protein | ali follow.. | 26 | 656 | ...PIPDGAATSQILDELMIRQVMDILPPRAE-GYPWVNIYNSEKHGFSLATMYRKMAEFDED----LSPVLLIIRDTKEHVFGAVVSSAIRPNDHFFGTGDSCLLWRFTGEELRQYNWTGDNQYFVNAAKDSLSIGAGSGRNGLWLDADLNHGSSQKCETFDNEPLCGD---DQDFIIQFIEAYGFR | 837 |
3 | -56.300 | [S] KOG2557 Uncharacterized conserved protein, contains TLDc domain | ali follow.. | 20 | 225 | ....APQNSHYRPIIELPHVLYINAQLPREHR--HKWRFLFSSKINGESFSTMLGKVLD--------KGPTLFFIEDEDQYIFGGYASETWSVKPQFGGDDSSLLYTLSPAMRC--FSATTYNNHYQYLNPNGLGMGGQFDFWGLWIDCSFGDGQSESCTTYRDYVQL---SKRKQFKIRNMEVWAV. | 399 |
4 | -51.700 | [S] KOG4636 Uncharacterized conserved protein with TLDc domain | ali follow.. | 12 | 178 | ....IINPDYSSDILSPLQMWYLQSSLPAVYSGESHWTPLYTSLQHGISTNRFETLVFDY-------RGPTVTIFRMKDGRVVVIAADQEWRHSGNRFGGTFTSFFEIVPNIRR----IDGANSIYCNLKLRSSAYGLSFK-NELKIEKDFDEILDIEVWGCAGA--------GTLADQQKLKNWQKQ | 349 |
5 | -8.960 | [R] COG2321 Predicted metalloprotease | ali follow.. | 10 | 135 | ........ADGTVYIDLSFYDDMKDKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFGVWGHSMQQQGVLETGDLEEALNAAQAIGDDRLQQQSQGR------VVPDSFTHGTSQQRYSWFKRGFDSGDPAQCNTFGKS....................... | 286 |
6 | -7.330 | [S] COG3825 Uncharacterized protein conserved in bacteria | ali follow.. | 8 | 171 | ......RDYDDTVELGTRNIKVALRRLRKFARDGADVELIHATAANAGLLDIKMRPERHNNVK--------VLMLMDVGGSMHIKRVEELFSAAKAEFKHLEYYYFHNCVYEWLWKNNRRRHAERFSTWD----VIRKYPPDYKLIFVGDATMSPYEILQAGGS--VEYNNPEAGAVWLQRLIAW... | 348 |
7 | -6.860 | [M] COG2173 D-alanyl-D-alanine dipeptidase | ali follow.. | 11 | 1 | .............MSDTTELVDLAVIFPDLEI-----ELKYACADNGKAIYQQARCLLHKDAITALAKSISIAQLSGLQLVIYDAY--RPQQAQAMLWQACPDPQYVVDVTVGSNHSRGTAIDLTLRDEHGNILDMGAGFDEMH---ERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSEWWHFE | 167 |
8 | -6.510 | [O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 | ali follow.. | 14 | 61 | AKGIEDALGKKKQQLTDEELTEAFAFLQKRAEERMA-----IGDENAKAGKKFLEENGKRDGVTTTASGLQYEIVKKAD----GPQPKATDVVTVHYEGRGTVFDSSIERGSPIDL-------SGVIPGWVEALQLMHVGEKIKLYIPSELAYGAQSPSPAIPNSVLV--------FDMELLGI.... | 227 |
9 | -6.040 | [M] COG1247 Sortase and related acyltransferases | ali follow.. | 8 | 2 | .....................................TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPYVAEDENGNVAAWISFETFYGRPAYNKTAEVSIY--------------------------------DEACRGKGVGSYLLQEALRIAPNLGIRSLMAFIFGHNKPSLKLFEKHGFA | 137 |
10 | -5.650 | [S] KOG0281 Beta-TrCP (transducin repeats containing)/Slimb proteins | ali follow.. | 11 | 232 | ............DKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDGEVLNTLIHHNEAVLHLRFSNGL-MVTCSKDRSIAVWDMASATDITLRRVLVGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW---DIECGACLRCIRFDNKRIVSGAYDGK------IKVWDLQ | 437 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5. |