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Query: [K] COG5175 Transcriptional repressor, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMNPHVQENLQAIHNALSNFDTSFLSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKRELHNKQQAQQQSGGTAFTRSGIHNNISTSTAGSNTNLLSENFTGTPSPAAMRAQLHHDSHTNAGTPVLTPAPVPAGSNPWGVTQSATPVTSINLSKNSSSINLPTLNDSLGHHTTPTTENTITSTTTTTNTNATSHSHGSKKKQSLAAEEYKDPYDALGNAVDFLDARLHSLSNYQKRPISIKSNIIDEETYKKYPSLFSWDKIEASKKSDNTLANKLVEILAIKPIDYTASVVQFLQSVNVGVNDNITITDNTKTPTQPIRLQTVSQQIQPPLNVSTPPPGIFGPQHKVPIQQQQMGDTSSRNSSDLLNQLINGRKIIAGNLast
1 -124.000[K] COG5175 Transcriptional repressor  ali  100  1MMNPHVQENLQAIHNALSNFDTSFLSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYDDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSEHYHHHSPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKRELHNKQQAQQQSGGTAFTRSGIHNNISTSTAGSNTNLLSENFTGTPSPAAMRAQLHHDSHTNAGTPVLTPAPVPAGSNPWGVTQSATPVTSINLSKNSSSINLPTLNDSLGHHTTPTTENTITSTTTTTNTNATSHSHGSKKKQSLAAEEYKDPYDALGNAVDFLDARLHSLSNYQKRPISIKSNIIDEETYKKYPSLFSWDKIEASKKSDNTLANKLVEILAIKPIDYTASVVQFLQSVNVGVNDNITITDNTKTPTQPIRLQTVSQQIQPPLNVSTPPPGIFGPQHKVPIQQQQMGDTSSRNSSDLLNQLINGRKIIAGN 587
2 -83.400[K] KOG2068 MOT2 transcription factor  ali follow..  32  1........................MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAESEGRCPACRTPYDKEKIVGMTVDQERLA-------SEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDL---LQRKEYFGQYGKVLKVSMSRTATGLI------QQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTRVQQITGATNTMQYRSGSMLPPPLDAYTSDSSTGNPIAKVPSSTSVSAPK---SSPPSGSSGKSTALPAAASWGARLTNQHSLATSALS.................................................................................................................................................................................................................................. 321
3 -16.600[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  18  60..............................................................................TLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRL------HVSNIPFRFRDPDL------RQMFGQFGKILEIIFNERGSKG-----------------FVTFENSADADRAREKLHGTVVEGRKIEVNNATAR.................................................................................................................................................................................................................................................................................................................................................................. 189
4 -16.400[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  12  1.........MNASTSSPSQQLQQAINSTIDKECAVCYSEM-------LPTSCGHKFCFICLKGVSVSNNGD--CPICRGPIDSQIFKKPLQAVDLKMDIPGTPSAAAPDPVVKQEVDDEDVKPDVKKLQEELKKQQWLYRGRHQGWWRFDPRIEKEIE--EAFTHQMPMTEVTICGNPYIVDFSQMCQYPKNQSNYSRNVKRVNSTDFDSLVKGMSGVFVATTSPPAA....................................................................................................................................................................................................................................................................................................................................................................... 222
5 -16.100[O] KOG2231 Predicted E3 ubiquitin ligase  ali follow..  9  21.....GVANTTTDNAAVKPEALESYTGNDDNACVVCFKNVEIFSIG----DCDHPVCYECSTRMRVLCQQNE-CPICRHVLSK--VLFTLDKLPYRELEANNRSDLYSKK-------------------RIGFCTAEIR-----------QQFFKLLDDAPPYRTFEGLRNLCVETLNIFTFERR-----YTQAELQLHNTKGDPDNR-LCEYCNKRYVDRDELLRREHYFCHFCDAFYNDYACEEGKCYKAHVANVHGKSLNKQQAKQTRTLQVEITLGPRGRSGQTEQGITSVRTRNDEHNDYQNDLPSITQRHVSIDAGNEEQFPTLRGASTAPSVSLVRPPPPSMRNLSGTSGLARTKENFPALGGGNGGGVTGPTSSSIAARAAQSQHPVAAVFKKPTSAAGSGSRSGPPGNGMLLHVSNRSAAVPKKAATPQVDFPALPGKGNKKNLRNLEEDMLPSGSPVPMANISAKHRSLADDYVSVASPSTFQKLQMVQKEEDEAKARQEALKKSAPKLTAAEFPSLGPSASASSSRTTAPKPSSGSPSLNWSKPANEKKQRELENRKAKVAPAPVLPSPTSKPAPK 619
6 -14.500[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  28  2........................................................................................................................................SRVYVGNLDPRVTEREL------EDEFRSFGVIRSVWVARRPPGYA----------------FLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGG.................................................................................................................................................................................................................................................................................................................................................................. 76
7 -14.400[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  17  2...........................................................................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEM------YDIFGKFGAIRQIRVGNTPETRG---------------AFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSN.................................................................................................................................................................................................................................................................................................................................................................. 91
8 -14.200[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  17  12......................................................................................................................................GMITLKVDNLTYRTSPDSL------RRVFEKYGRVGDVYIPL------------EPHTKAPRGAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYG.................................................................................................................................................................................................................................................................................................................................................................. 93
9 -14.200[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  17  36...................................................................................................RGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI------QEKFCDYGEIIHLNLDRRTGFSKG--------------ALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK.................................................................................................................................................................................................................................................................................................................................................................. 152
10 -14.100[O] KOG0320 Predicted E3 ubiquitin ligase  ali follow..  21  241.......DLDVASPPKRVNRDIDESQKEELYKCPICMDSVSKREP----TKCGHVFCREC---IETAIRATHKCPICNKKLTARQF..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 314
11 -14.000[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  24  4........................................................................................................QPVPGSGFHYLNSPFGDTTFTK------------VFVGGLAWETQSETL------RQHFEQYGEILEVIADKNTG------------RSKGYG-FVTFRDPEAARRACAD-PTPIIDGRRANCNLASLG.................................................................................................................................................................................................................................................................................................................................................................. 102
12 -13.900[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  11  71...........................................................................................YDNNGGHRSGGGGGRSGGGGTSFNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETEL------KELFSPHGDIAECYLSGK--------------------AFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG--AIRVKELSPTVSN---LYHAGDERAVHIVDEKGRPT............................................................................................................................................................................................................................................................................................................................ 229
13 -13.800[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  1...............MSKTTNTYNRQNWEDAEFPI--------------------LCQTCL-YVRMIKERFGKCKICTRPFTECPYRHDKPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPEL------RDQFYQFGEIRSIALVPRQQCA-----------------FVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQ.................................................................................................................................................................................................................................................................................................................................................................. 304
14 -13.600[O] KOG0801 Predicted E3 ubiquitin ligase  ali follow..  17  152VASDEMEMHFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDT---PCLCIYH-CIDSW-------EVNRSCPEHP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 225
15 -13.600[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  15  3.............................................................................................ASVELSSYRDQHFKGSRSEQERSLRDSCT----------------LYVGNLSFYTTEEQI------HELFSRCGDVRVIVMGLDKYKKTPCG------------CFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGF.................................................................................................................................................................................................................................................................................................................................................................. 109
16 -13.400[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  11  109........................................................CRLC-----GNDHMTMNCP--KTILSELSALEDPATNEGGVEAASEEKAGQVGGAGSSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSL-----REELLFPFAPIPRVSVVRNKETGKSRG------------AFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPK.................................................................................................................................................................................................................................................................................................................................................................. 271
17 -13.400[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  13  25...........................................................................................VYRFQASSMAFCTKLGGHWKQGVNVPVSSMLGSLRY-------MSTKLYIGGLSPGTDEHSL------KDAFSSFNGVTEARVMT------------NKVTGRSRGGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDW.................................................................................................................................................................................................................................................................................................................................................................. 142
18 -13.200[A] COG5183 Protein involved in mRNA turnover and stability  ali follow..  9  7VNVSRLRDELHKVANEETDTATFNDDAPSGATCRICRGEATEDNPLFHPCKCGHESCLLEW--VASKNIDISKCDICHYPIQFKTI-YAENMPEKIP---------------SLLLSKSILTFFEKARLALTIGLAAVLYIIGVP-------VWNMFGKLYTMMLDGSSPYPGDFLKSLIYGYDQSATPELTTRAIFYQLLQNHSFTSLQFIMIV-ALYFQYDMIVREDVFSKMVFHKIGPRLSPKDLKSRLKERFPMMDDRMVEYLAREMRAHDENRQEQGHDRLNMPAAAADNNNNVINPRNDNVPPQDPNDHRNFENLRHVDELDHDEATEEHENNDSDNSLPSGDDSSRILPGSSSDNEEDEEAEGQQQQQQPEEEADYRDHIEPNPIDMWANRRAQNEFDDLIAAQQNAINRPNAPVFIPPPAQNRAGNVDQDEQDFGAAVGVPP......................................................................................................................................... 448
19 -13.100[K] KOG1079 Transcriptional repressor EZH1  ali follow..  14  553.............................SYMC--CDIN----SQRFPGCNCAAGQCY-CQCYRANWECNPMTCNMC-----------------KCDAIDSNIIKCRNFGMTRMIQKR------------TYCGPSKI----GL---FLLEP----AEKDEFITEYGER----ISDDEA------ERRGAIYDRYQCSYI-FNIETGGA-----IDSYKI-GNLAR-----------FANHDSK-NPTCMVVA--GEHR--YAKRRLEISEELTFDYSYSGEHQIAFRMVQTKERSEKPSRPKSQKLSKPMTSE................................................................................................................................................................................................................................................................................. 773
20 -13.100[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  15  139........................................................CRICHKK---GDHWTSKCP-----YKDAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDL------MELFHPFGAVTRVYVAIDQKTGVSRG------------GFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR.................................................................................................................................................................................................................................................................................................................................................................. 292
21 -13.000[O] KOG1645 RING-finger-containing E3 ubiquitin ligase  ali follow..  5  76...SPVRVSQNESEGIENQNRRMSNGNKVTLRDCLVLSVWK-FGPAVANTKSGIIVFPVDT--CMDIPASTSGFSSDEVEYASRVAAVDDEAHKRILFLEAKLRSIEQKTASWSNKEVQWKITEAELRLEVTKLKKKIANM--FDIDGGRQILLYARRLSGVGGTFV-LTQMSLHSPCEIDDILLPRTTRAIKD-----LHLSPHNNGLAVFGSLGKKLSHNTVLSYDLPAAPWSCSW------KSSHHIYA---GLQNGMVLIFDMRQTTG........................................................................................................................................................................................................................................................................................................................... 395
22 -13.000[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  14  18.........................SAERNQDATVYVGGLDLSEELLWE--------LF-AGPVVNKDRVTNL----HQNYG---IEYR--SEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN--------LFIGNLDPDVDEKLL------YDTFSAFGVIASNPKIMRDPDTGNSRG------------FISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK.................................................................................................................................................................................................................................................................................................................................................................. 192
23 -12.900[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  11  122.........................QRALAIMCRVYVGSIELGE-----------------DTIRQAFAPFGPIKSIDMSWDSVTVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI------KSVFEAFGKIKSCTLAR------------DPTTGKHKGGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP.................................................................................................................................................................................................................................................................................................................................................................. 305
24 -12.800[R] KOG0226 RNA-binding proteins  ali follow..  19  157...................................................................................DKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDE-------NDFRVFCGDLGNEVSDELL------AKAFRKYPSFQKVVRESRT--------------NKSKG-FVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWK.................................................................................................................................................................................................................................................................................................................................................................. 282
25 -12.600[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  15  33...........................................................................................EIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEI------EQHFHGCGSVSRVTIQCDRFSGHPKG------------AYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTN.................................................................................................................................................................................................................................................................................................................................................................. 156
26 -12.300[O] KOG0827 Predicted E3 ubiquitin ligase  ali follow..  13  3.............................NLNCVICAELFGQAD-EVFATVCGHMFCLNQW-------DRSKTCPQCRNKCTTRNIFRVYFNQEQLDNAMLSMKMVEKERNKDEQQIRDLKETQKKCLKTIAGLEQKV----------KKDFLISSYVEQGVLKSDAHVVDGLRKENK----------------------TLKSQIQSMEGISALAAGSADADRLLKNEADPHWVSTLKRELRQCESKKTELRN---RKEIELKRYAHNIPNVVFIIDMCSFDCSKLEERVSHLESDLYQAQEKLQAFENKTAYLDSPNASCGLNSNILALKREERRTTISPTVKENIKRIEESTSPYLNIKSSSVGLAHLLNTKGNIGLAKSKISPIKGVGGGVSMTSGTIRKTSSDLSEKYS............................................................................................................................................................................. 378
27 -12.300[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  15  11......................................................................................................................................EERTIYVANFSEEVDEELL------EELFIQAGPVVKVILRDVRDSNAK--------------ALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGT.................................................................................................................................................................................................................................................................................................................................................................. 90
28 -12.300[DKL] COG5220 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3  ali follow..  16  1....................MDDEGARKVDEKCPLCQADR-YLNPNMK--ECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKAKFREQTFEDAQIEREVDVRKRISRIFNKGQQEFDSLQAYN-------DYLEEVEILTFNLIYKIDVEETEEKVK------QYEKQNRDSIAANSA........................................................................................................................................................................................................................................................................................................................................................................................................................ 148
29 -12.000[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  19  1.....................................................................................................................................MVR--VYIGRLPNRASDRDV------EHFFRGYGKLSDVIMKNG--------------------GFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRK.................................................................................................................................................................................................................................................................................................................................................................. 73
30 -12.000[A] KOG1996 mRNA splicing factor  ali follow..  19  262..................................................................................STALSVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILKCPTKV-VLLRNMV-----GAGEVDEDLEVETKEE---EKYGKVGKCVIFEIPGAP----------DDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACF----Y-----------------------NLDKFRVLDLAE.............................................................................................................................................................................................................................................................................................................................. 403
31 -12.000[S] KOG4367 Predicted Zn-finger protein  ali follow..  11  5...........................EEELKCPVCGSFYR------EPLPCSHNLCQACARNILVQTPESEQSHRAAG---SGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCIPQCHRSLILDDRG-LEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHGPLAKHRLVPPAQGRVSYC------VQCKMPVCY--HEVKALGAMWKKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSG........................................................................................................................................................................................................................ 381
32 -12.000[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  17  1...............................................................................................................................MLTADIPPNQSIYIQNLNERIKKEELKRSLY--CLFSQFGRILDVVALKTPKLRG---------------AWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAK.................................................................................................................................................................................................................................................................................................................................................................. 90
33 -11.900[O] KOG4265 Predicted E3 ubiquitin ligase  ali follow..  17  257...........ENKNNQETKPSDDENSDNSNECVVCLS--DLRDTLILPC-C---LCTSCADTLRYQ---ANNCPICRLFP------------GPPADPGGAEEARSPVPRVLQPRPGPE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 347
34 -11.600[K] KOG2494 C3H1-type Zn-finger protein  ali follow..  11  1................MTAVNVALIRDTKWLTLEVC--------REFQ-CSRADADCKF--HVCHVENGLKGRCENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQLMLQNAQMSSLGSFPMTPSIPANPPMAFNPYIPHPGMGLVPAELVPNT---------PVLIPGNPPLAMPGAVGPKLMRSDKLEVCREFQRTRGENDC--------TDASMIEASDNTVTICMDYIKGR-CSREKCKYFHPPAHLQARLKAAHHQMNHSAASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVFHCQQALTNLQLPQPAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPTTGNQ........................................................................................................................................................................................................................ 351
35 -11.600[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  18  12......................................................................................................................................GDGRIYVGNLPTDVREKDL------EDLFYKYGRIREIELKNRHGLVP---------------AFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY.................................................................................................................................................................................................................................................................................................................................................................. 90
36 -11.500[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  16  1..................................................................................................................................MAAFSRSAGPILSLNP-QEDAEL------QKEVAQCDTVTRFRLSRKKRTGNSKG------------AFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPE.................................................................................................................................................................................................................................................................................................................................................................. 85
37 -11.500[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  20  1..................................................................................................................................MSMTAGNVVFVGNIPYDVSEQQM------TEIFNQVGPVKKLVLDPETG------------SGKGYG-FCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSND.................................................................................................................................................................................................................................................................................................................................................................. 86
38 -11.400[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  14  1................................................................................MQSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKAD-------NRGVCYLSRIPPHMDHVRL------RHILAQYGELGRIYLAPEADTFVYCYRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKSSVYYNIKYLTKF............................................................................................................................................................................................................................................................................................................................................................. 158
39 -11.400[R] KOG3002 Zn finger protein  ali follow..  20  26.AKVEANSKPTKSGSGSIGKFHSSNGVYELLECPVCTNLMY-----IHQCPNGHTLCSSCKLRVQN------TCPTCRYE-----------------------------------------------LGNIR--------------CLALEKVAESLEVPCRYQNLG----------------------------CQDIFPYYSKLK------------------------EQHCRF--RSYSCPGSECSVTHLKDDHKVDMHD................................................................................................................................................................................................................................................................................................................................... 175
40 -11.400[O] KOG4159 Predicted E3 ubiquitin ligase  ali follow..  15  5..............................................FEPVPCGHSFCKNC---LERCLDHAPYCPLCKESLKEYLADRRYCVTQLLEELIVKYLPDELSERKKIYDEETAELSHLTKNV---PIFVCTMAYPTVPCPL------------HVF-RY----RLMIRRSIQTGTKQFGMCVSDTQNSFADYGCMLQ-------IRNVHFLP-DGRSVVDTVGGKRFVLKRGMKDGYCTADIEYLEDVKVENEDEIKN.................................................................................................................................................................................................................................................................................................................................. 197
41 -11.300[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  14  125.......KSPHFREKSPVREPVDNLSPEERDARTVFCMQLRIRPRD-----------------LEDFFSAVGKVRDVRIISDRNSVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML------RGIFEPFGKIDNIVLMK------------DSDTGRSKGGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER.................................................................................................................................................................................................................................................................................................................................................................. 326
42 -11.100[K] KOG2169 Zn-finger transcription factor  ali follow..  11  386LNQNVSRHRSLEVTKQEVIKKLS--GGEDD-LDPLCKTRMTT------PSRCTHLQC-F-YLMMNEKKPT--QCPVCSSNCPYDRL----------------------------------------------IVDD---YFLDMLAKVDKNEV--ELKED---GSY----DVIKEEAFCISDDDDDDVVPATVNGTASCSSTNGNGLANEAAKKKP----------------------------ADDDIITLSDDDDEELNRGIMNSLNDSFSPGRHTASAELAAQKTPPQQKKKTKDDDIEIITLDDTPPRPVAASANLPMRQMSQQNQMPVGSSPSGMASTQMGMNEGASKTIRDALNKIGEPMINQAPHFQMQNGLIGRNNQMVHMQQHHLQQQQQQQQSPQIMSPSFYAQQQMSNGDTNNIQPPRILSMAEIQANASRLLVNGHLMIDHSGVTMRNPR............................................................................................................................. 768
43 -11.100[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  10  3.....................................................................................IKMATLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDL------KPLFEEFGKIYELTVLK------------DRFTGMHKGAFLTYCERESALKAQSALHEQKTSEDDVREAFGNIEECTI-LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTAAD.............................................................................................................................................................. 374
44 -11.000[R] COG5236 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  7  37.....KQKKNNLSAEPNLTTSSADDTDEENELCVICARKLTY--------PCHHKTCHICGFRQRALYNKK-SCLICRTENEEVMFTDRIDGNEKYGINFTSEEVATETLNLLKFFCPLSKDEQVCDFGSFKKYNEHL--------------------KSEHNRMICLI-HAFPCELEIFTQNQLRNHQTKGNSE-----RFYSDDELYI--------------MRNQHEKCHICDK--SHYVCTVQTCLQAHILQEHGNILKGKPKFFQSELSTFISAPSRVIRERDDYDLPSISSLPGSSSGSRTDVRSASSPEESRLRLAERAKYYLENSKEDFNKFSSYNEDYSKGRLSAEKLLESYKLLFTKPNADVYLLIHNLAETFPKNSSKYNNLNAIYEQREQTLARQTSLPSLSSDSSLSMSIGRGHWGGTNDGGSAGAALGVRNIKNLPTLKSPSASYDPFATTVKKNTLRPVQNIKRTTPQSVSYRTSTNTVAFSPTYLESKKGSSSTSLNNSKDKLKSLNLPQLPPPKPKVQIPGLNRPQIADPKQWGKKSSTQDTNVHDNLRELNTTSGGNKKKGKQKQ.... 632
45 -11.000[R] KOG4733 FOG: RRM domain  ali follow..  16  1............................................................MGKVWKQ-QMYPQYAT---QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKT--------------NL-YIRGLPPHTTDQDL------VKLCQPYGKIVKAILDKTT--------------NKCKGYFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT--NLYISNLP----------------LSMDEQELEN.............................................................................................................................................................................................................................................................................................................................. 159
46 -11.000[O] COG0068 Hydrogenase maturation factor  ali follow..  14  103............................DAATCPECQREIDPFSRFYYPCTCGLSIIR--YDRCNTSMSAFVMCPECEDSYHNRRFHAQPVACHTCGPKAWLERADGKPVTASMFSMLDDVDAVCTLLQKGEIVA---IKGIGLACDATQEAAVEKLRQRK-FAKYCFVNDVLLEKRTEEISSFPIASTVAPGNTLGFMLPYTANDEAKEKLSHIDYFLLHNRIMRRARGYAPAMGSELKNTFCREGEAILSQHLGDLENALAFDCYQDT............................................................................................................................................................................................................................................................................................................................. 451
47 -10.900[T] COG5432 RING-finger-containing E3 ubiquitin ligase  ali follow..  19  23...........................DTLLRCHICKDFLK-------PTPCGHTFCSLC---IRTHLNNQPNCPLCLFEFRESLLRSEFLVSEIIQSYTSLRSSLLDALRIPKPTPVPENEE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 111
48 -10.900[L] KOG0287 Postreplication repair protein RAD18  ali follow..  19  23...........................DTLLRCHICKDFLK-------PTPCGHTFCSLC---IRTHLNNQPNCPLCLFEFRESLLRSEFLVSEIIQSYTSLRSSLLDALRIPKPTPVPENEE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 111
49 -10.900[O] KOG0802 E3 ubiquitin ligase  ali follow..  15  334.......KLRIALGALHAALPDATSEEAYDDECAICREPMAKA----KRLHCNHLFCLRSW--LDQGLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 452
50 -10.800[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  14  568.......SSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTE---------------DEIRQAIEGVASIRFARKANSDLVHRFAYVVMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVHFQATDDEL------KALFSKFGTVTSVRRVTHKDGKPKG-------------AFVDFDTEASAQKCVASGDKLMLRERELEVALSNPP-----------------------------VKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSND................................................................................................................................................................................................................................................................... 827
51 -10.800[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  10  3................................CESCGVEFTVFRRK-RACDCKRYYCANC---------ASRRCKRCS----------------------------------------AQRPLSRTDLLKLKP--KDL-YL-HISTELEKEELV----------------GLVLTHVAQVDRSRGSNASSNSPGR------------------------------------------------------------GQANPIDSLKQSCQNFFSNLSDNISDSLASFDSKVTTKPPESRQPEVPTHIFEQPRVSTREIPTYASAVNGGPQHVHVQQQATTTNGGSQSSSSPSTSTQSSNNRDASSSSQAHVAHQEARNEEQEDAQSKSDCECSDEEIMATFSERVSISLKTDTSGRRVNAAAEPSPVDLANVDNGPAGNTAPSPGCSKPGSSSSKADASSQSSFEELGAIGGISDESKANTDTNSSH..................................................................................................... 337
52 -10.800[O] KOG0823 Predicted E3 ubiquitin ligase  ali follow..  15  91.......ENKTYLIAKALNMEKTSSVPGGFFDCNICLEKAE-------PICCGHLFCWGCFYQLPLIYLNIKECPVCDGEVTDAEVI--PIYGNGDDCDGTKPKLEDCGISLPPRPNAKRVESVRQKIIN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 207
53 -10.800[O] KOG1571 Predicted E3 ubiquitin ligase  ali follow..  16  265.......RERLDTERRERRARSRPHTLSQDQLCVVCSTN----EIILLPC--GH-LCEDCAQKISVT------CPVCRGSIVSKAAAFIA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 338
54 -10.700[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  9  43....PAQNEKRKEKNIKRGGNRFEPYANPTKRYRAFITNIDVKWQSLKD-KVG-EV------YVELLMDAEGKSRGC--EFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMG--LGSTVFVANLDYKVGWKKL------KEVFSMAGVVVRADILEDKDGKSRG-------------GTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA.................................................................................................................................................................................................................................................................................................................................................................. 282
55 -10.600[R] KOG2789 Putative Zn-finger protein  ali follow..  8  146...........................ANAMECPICF---------YYPC-CAQPICSECFVEIRRAESEPAKCPYCMTE--RFGVIYKPNPKLTPFSFNNNPDTLPSNIAPMGTLSKSSLPLHHIPWPPNQ--HIKF--------AHDDKNVVST--HPDWQYKLERARRRALRRAANATLLNSHLLETGPANANANHNTDLSHDPTSH--ANVEQLML--EAIRQSL---------------------------DAQSNDSTNSLPSTEVSQPDSTNISNEQEIVQPQPTHTTNVALVEEINRPDSVESAITASSSIDTGNENETQEVNSDSLPQFVHQTMTQTNFQESSPSVAADETRVHNVDEYIEQQDLDELIHSPIASTNPFLADQFARSETVDLNAHICSPALSVSDDGVTATNKTQSSFPSVYEHQLKSNELER................................................................................................................................................. 552
56 -10.600[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali follow..  11  1................................................................MESNHKSG-------GTQKEAALRALV--QRTGYSLVQENGQRKYGGPPPGWDAAPPERGCE------------IFIGKLPRDLFEDELI------PLCEKIGKIYEMRMMMDFNGNNRG-------------AFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIP----------------KTKKREEILS.............................................................................................................................................................................................................................................................................................................................. 154
57 -10.500[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  12  6................................................................................................................STGATAVATLRETSPPVDGHEEARL-MFIGGLSWQTTAENL------RDYFGRFGEVNECMVMRDPATKRARG------------GFITF-VDPSSVDKVLNNREHELDGKKIDPKVAFPK--KVFIGGLSATSTL--YFETYGKVEDAMLMFDKATQRHR.......................................................................................................................................................................................................................................................................................................................... 175
58 -10.500[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  13  319.......KIWRNNKQLDDTLVTVTVEQLQDNICIICMDELIHSPNQ-KRLPCGHILCLKNW-------ERSQTCPICRLPVFDEKGNVVQTTFTSNSDITTQTTVTDSTGIATDQQGFANEVDLLPTRTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 452
59 -10.500[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  11  4.........................AASSYPMASLYVGDLDVTEAM-----------------LYEKFSPAGPVLSIRVCRDMITVNFQ--QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS-------GVGNVFIKNLDKSIDNKAL------YDTFSAFGNILSCKVVCDENGSKG--------------AFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYI---KNFGEEVDDESLKE.............................................................................................................................................................................................................................................................................................................................. 209
60 -10.400[O] KOG2164 Predicted E3 ubiquitin ligase  ali follow..  11  201...................WQVLCSSDFQLAACPFCLEEKPVAAR----SRCGHVYCFSCLLRFVETPTAAESCPICWDSIRLRDVH-LRLYQRNNGSILAFPRSCRSFALDGSFHSDEIPNFTMSGAAYARIIIGSHDYMV----QQHLLEIEQLQQIAAEDISLYGSADTYYERSLKQLSEVDDLNDVSGSEIADAYLFYQPFAHSHIYLSPLD------RILKSAFGSYENFPDELVPR---RQRFKYMHLPEGCEVAFIECDWSKIIPKEVLLTFKSEISKRRKQRKAQEMREERYRQRAERDTEEQIYSELNMQRPVPKTVVHEDPAEAFPTLGSHHQFESTDEVNTDESTLSTAKTVWGTRALANIQNDTDDQDDLDGWKVDWDKVAQLSAPSKNSKNKKKKK.................................................................................................................................................................................. 662
61 -10.400[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  14  81...TSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLDVTVDEIE--KCG---------RIKIYRTEDGTVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQIVVLKHIFTLEELDKT---IDLKDDIT--EEAEKCGRVTNVVLYDKEPDG----------------VTVRFSNNEEAEACVRLMQGRYFDGRVVEASIGKVRFQKSGKHTLDDEEDEEKRLEKFADWLEN...................................................................................................................................................................................................................................................................................................................................... 365
62 -10.400[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  12  9.........................DQPDLDAIKMFVGQVTWSEKDLRE-QYG-AV-------LRDRSQNPPQSKGC--TFYTRKAALEAQ--NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRK------------LFIGMISKKCTENDI------RVMFSSFGQIEECRILRGPDGLSRG-------------AFVTFTTRAMAQTAIKAMHQAQTCSSPMVVKFADTQ------------------------------KDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQT..................................................................................................................................................................................................... 316
63 -10.300[R] COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger  ali follow..  10  1...............MSAAIEKETGMLDVGKHCAYC-RQLD-----FLPFHCSF--CNFCSNHRLKEDHH---CRWRIQRVSETREPLRGSNTAKVSSTLNSNNKSKKNFGSSSNKIIQLANLKKIAKGDPKIPMQNRIYICYLVDGDETDIAKEDTRMPLYINK-GRAMDYLSIQ------NVKSSTLTNSSSNDKFQLCKLKEGKQVSF-LRVTNEIKDLDTLYLVHNN.................................................................................................................................................................................................................................................................................................................................................................... 268
64 -10.300[O] KOG3800 Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor  ali follow..  8  1..............................KECKKCKSNEYTNQLVMMINECGHPLCKNCVDNIFALN--SGNCHVCNRVLRKN--NFREQIYEDPLIDKETFLRRKLRKIYNLKQDDFENLREFGDYQERKFFEPLKFPVKKISNFRRFKNFKNFFYEFS--------IRYSNSPSFSWSNPEFSAQNSKIAPSNSKFQFFRFETVVYNLVFETNVNETNAEIQAFE---EKHKEQIDRNKRRLDDDQKWIEDQLREERAMKARMTDHMEMDAKEQEAASAVTDTRKIMDELRDSNVAAEVILDRERKKQIEKELEEKEEQEKRKRRNKEMLQTRKRAAENMSFNTVIRVAGRAYVHQVGHENSEEIEKMQ....................................................................................................................................................................................................................... 329
65 -10.300[O] KOG1873 Ubiquitin-specific protease  ali follow..  11  19.MEISKKVSEEPPSQAGEIAEGDVKAVKETQACV-CNEGVKSNNKAIWLCECGCYVC----HHSRVTRH----CFPCQLLLPVEKED-ASSDIEDQCSGSGSITSDIKLEGAVTSDIEARDGYVVRGLVNL-----NTCFFNSIMQNLLSDRLRDHFLKENGSGVGGPLASSLFTETKPEAGLKSVINPRAFFGSFCSK-QFRDQHDSHELLR-LDSLSTEESALRGETSSIVSC------MECGHSSKVY--------EPFL--DLS............................................................................................................................................................................................................................................................................................................................... 382
66 -10.300[L] KOG1002 Nucleotide excision repair protein RAD16  ali follow..  9  547LRQAVDHPYLVVYSNSSGANANLVDENKSEQECGLCHDPAEDY-------SCAHVFCKACLIGFSASLG-KVTCPTCSKLLTVDWTTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEAEEIRFMV--AKAIVFLIGVSCVQLVGSMTMAARDTNKFKEDPDCRVFLMSLKAGGVALNLTVASH-------VFMM-AVERQAQ------------DRIHR--IGQYKPIRVVIENT---EERILRLQK-QEAIGKLTEEDMRFLFTT.......................................................................................................................................................................................................................................................................................................................... 833
67 -10.200[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  12  1...............MAEHLASIFGTEKDRVNCP------------FY--KIG--ACRH----------------RCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDF------------------------FEDLFEE------LGKFGEIESLNICDNLADHMIG-------------VYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVT-CRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA.................................................................................................................................................................................................................. 296
68 -10.200[O] KOG1813 Predicted E3 ubiquitin ligase  ali follow..  16  252.......AMGVEDEDDEADKDSDEDENALPFACFICREPF-------DPVKCKHYFCEHC---ALKHHTKNKKCFVCNQPTMG--------AAHEIKKRMAEERSKAEQGLRRLWPVGEVVPKSK.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 357
69 -10.000[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  13  2.............................................................................................NPLTKVKLINELNEREVQLGVADKVSWHSEYK---------DSAWIFLGGLPYELTEGDI------ICVFSQYGEIVNINLVRDKKTGKSKG------------CFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNY.................................................................................................................................................................................................................................................................................................................................................................. 115
70 -9.900[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  15  5...............................QCDDCGENLKKPPRHMSMCSC---FCSLC-HQEKLSNDYPWFCSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDNGRKHRENVELFDAT-IFVRGFGWDTTQENL------KTAFESYGEIEEVVMDKDTG------------RGKGYG-FVMFKTRKGAREALKRPEK-RMYNRIVVCNLASEK.................................................................................................................................................................................................................................................................................................................................................................. 486
71 -9.870[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  7  91......................................................................................................................................GVRTLFVSGLPVDIKPREL------YLLFRPFKGYEGSLIKLTARQP----------------GFVIFDSRAGAEAAKNALNGIRFDPQTLRLEFAKAN------------------TKMAKSKLMATPNPSNAWAPYPLYTTELTPAISHAAFTYPTATAAAAALHAQRRHIRQCTPTCRIEKLMLKGLVTGEVVLVTAPRLTPSPESQSCTGRLGSKMSVLVNASAGDPGALREEEEEPGQDQALQMEKVKHRGVSKRSVLLLSLGIAQSLPYLRVDHPPDPAQRLCQRPSSPFTAFCQPSGSQATSSPVRKRAAWGSQAKGEGDAAIINEPGTELRPLNDSEQIRRVEGYSEEEISK............................................................................................. 414
72 -9.800[U] KOG4442 Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis  ali follow..  15  109............QECQYASANIGKPPENEAMIC--CRPHWVDGVNV--ACGHGSN----CINRMTSIECTDEDNVCCQ---------------------------NQRFQRHEFAKVDVFLTEKK----GLRALPKDYEYI-G----IPEQKFRKRMRQYDYFGSLARVDKWMVGDKL-----------------MGIF--------CKRDIIR-------GEELTFDYNVDRYCY-------CGEPCCVYI---GGKTQTEAQSKLPE.............................................................................................................................................................................................................................................................................................................................. 333
73 -9.690[O] KOG0826 Predicted E3 ubiquitin ligase involved in peroxisome organization  ali follow..  16  219.......LINPEAMPRKQLPKEVQQSLPQRGECPVCLLSIQTPTA-----VSGYVFCWKC---IVSHMKEHGTCPVTHYPISLDDL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 291
74 -9.650[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  18  115.............................................................................................EELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELP----QTTNLYVVNLSSKVDENFLL------RTFGRFGPIVKIMWPRTEEEKRRERH-----------GFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVV.................................................................................................................................................................................................................................................................................................................................................................. 253
75 -9.630[R] KOG0118 FOG: RRM domain  ali follow..  10  133................................................................................................TGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQL------AGLFVSCGQVVDCRICGDPNSVLR--------------AFIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTA------EDEREMCARTIYCTNI---DKKVTQSDVKI.............................................................................................................................................................................................................................................................................................................................. 288
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;