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Query: [A] COG5180 Protein interacting with poly(A)-binding protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKGNFRKRDSSTNSRKGGNSDSNYTNGGVPNQNNSSMFYENPEITRNFDDRQDYLLANSIGSDVTVTVTSGVKYTGLLVSCNLESTNGIDVVLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELKNIDLSLDEKWENSKAQETTPARTNIEKERVNGESNEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALEDDSASWDQFAVNEKKFGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQGTSGNIHIAEDRGIIIDDSGLDEEDLYSGVDRRGDELLAALKSNSKPNSNKGNRYVPPTLRQQPHHMDPAIISSSNSNKNENAVSTDTSTPAAAGAPEGKPPQKTSKNKKSLSSKEAQIEELKKFSEKFKVPYDIPKDMLEVLKRSSSTLKSNSSLPPKPISKTPSAKTVSPTTQISAGKSESRRSGSNISQGQSSTGHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVLFGKSFNMFIKSKEAHDEKKKGDDASENMEPFFIEKPYFTAPTWLNTIEESYKTFFPDEDTAIQEAQTRFQQRQLNSMGNAVPGMNPAMGMNMGGMMGFPMGGPSASPNPMMNGFAAGSMGMYMPFQPQPMFYHPSMPQMMPVMGSNGAEEGGGNISPHVPAGFMAAGPGAPMGAFGYPGGIPFQGMMGSGPSGMPANGSAMHSHGHSRNYHQTSHHGHHNSSTSGHKLast
1 -119.000[A] COG5180 Protein interacting with poly(A)-binding protein  ali  100  1MKGNFRKRDSSTNSRKGGNSDSNYTNGGVPNQNNSSMFYENPEITRNFDDRQDYLLANSIGSDVTVTVTSGVKYTGLLVSCNLESTNGIDVVLRFPRVADSGVSDSVDDLAKTLGETLLIHGEDVAELELKNIDLSLDEKWENSKAQETTPARTNIEKERVNGESNEVTKFRTDVDISGSGREIKERKLEKWTPEEGAEHFDINKGKALEDDSASWDQFAVNEKKFGVKSTFDEHLYTTKINKDDPNYSKRLQEAERIAKEIESQGTSGNIHIAEDRGIIIDDSGLDEEDLYSGVDRRGDELLAALKSNSKPNSNKGNRYVPPTLRQQPHHMDPAIISSSNSNKNENAVSTDTSTPAAAGAPEGKPPQKTSKNKKSLSSKEAQIEELKKFSEKFKVPYDIPKDMLEVLKRSSSTLKSNSSLPPKPISKTPSAKTVSPTTQISAGKSESRRSGSNISQGQSSTGHTTRSSTSLRRRNHGSFFGAKNPHTNDAKRVLFGKSFNMFIKSKEAHDEKKKGDDASENMEPFFIEKPYFTAPTWLNTIEESYKTFFPDEDTAIQEAQTRFQQRQLNSMGNAVPGMNPAMGMNMGGMMGFPMGGPSASPNPMMNGFAAGSMGMYMPFQPQPMFYHPSMPQMMPVMGSNGAEEGGGNISPHVPAGFMAAGPGAPMGAFGYPGGIPFQGMMGSGPSGMPANGSAMHSHGHSRNYHQTSHHGHHNSSTSGHK 722
2 -12.100[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  6  547............................................................................................................................................................................SEGESD-----------PLWLRQKTIQMIDEFSDVNEGE----WNLHVMRHGMFNLYRNFILHMCSL-IA------AETVYKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPP.......................................................................................................................................................... 954
3 -9.900[A] KOG3172 Small nuclear ribonucleoprotein Sm D3  ali follow..  16  9....................................................VKLLHEASGHIVTVELKSGELYRGSMIEC----EDNWNCQLEDITYTAKDGKVSQ-------LEHVFIRGSKVRFMVIPD-ILKHAPMFKRLDARIKGKSSSLGVGRGRGAMRGKPAAGPGRGTGGRGAVPPVRR....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 131
4 -9.600[A] KOG3428 Small nuclear ribonucleoprotein SMD1 and related snRNPs  ali follow..  14  2..................................................KLVRFLMKLTNETVSIELKNGTIVHGTITSV----DMQMNTHLKAVKMTVKGREPVP-------VETLSIRGNNIRYYILPD-SLPLDTLLIDDSTKPKQKKKEVVRGRGRGRGRG-----------TRGRGRGASRGF..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 117
5 -9.450[NU] COG3170 Tfp pilus assembly protein FimV  ali follow..  11  45.......................................................VRSSLGQNLVAKLASPDAYQGLVISAQPVAEPFVDILVDLTRVSRA---------------TFLLDPAGSSNTPRNFAPTPVVQATTPGVVDSTPAPVAAAPQAPAAAPRAARPARQAAVRPQADAAAAEPSSGAGYTVQRGDSLYDVASNAVQGQDGVSLDQYRNNPKAF------GGNI--NRLRTGSPSAAEAQKVSSREAREVVAQTSG-----AGYRSRLATAAEANAATDTDSARQQSGSVSARVQDQATPSASERDELRLSKADRTGKAAATAGARAEELVAKEHALKEMESRVAQLEKNLSEMQHLIEVKNAELAKAAAAKPAAGAAPSPATAAPAVTAANAPAPSASASATPAQAPAAAASSAETASSATATAGASAPAAATPAAASAPVAEASAPAAAPRKAPVVV........................................................................................................................................................................................................................................................... 492
6 -9.280[R] COG5545 Predicted P-loop ATPase and inactivated derivatives  ali follow..  9  377.................................................SLLDKLAERYFGTNVARAFEPGCKHD-ILQGKQKSLKSTFWEILAGEEFFTDDLNGTEKDEVLKISQYWILEYAEFENSYKKDVS-AFLSRKKDSMRRPYGTDIEDFPRPSILVGTTNLDEFLYDP--TGERRKMLQQERDLWA--------------------AAVAAYRNGEQWR-----LTEV--DEWLDAANKQYQSTDTWEEAVMAWAELQKEVSVGEILSD-KIELAKQSKAEQNRVAAILRSHG----TRGDRKRVNGRLIRPWVRPQQEVEQEVERGVEQEVERGVEQEVEQPQALVTTDLEPECSTCSTNSPQTFPNFDSNNETAQWIAPQTAAPFVTPQETTPTEANEKSLEGQGVEQPVDEPQTQSPQVIEECSTPCFTSGSSLELSFEQKLMGNVA......................................................................................................................................................................................................................................................................... 788
7 -9.220[K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM  ali follow..  8  3...............................................................VVIFLKNGNNQHGT--------EAAFG--LAQSYRIQD----------------LLF----IIVIFFRAIHIMMFHRPPSASLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMN-----RRLYIFSSTGVSENDQQQ-----------WDAFSHERERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRQAYENENVLQITRFEVNTEGKLYVEFAPFDE-KAWTLELKRSNEFVYNQNTADYRVEAQNPEQENKPRMG---------FKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEPEKPKPARKRQRKPAANPRGSKKATAAAAAAAAAATNGVPPTVPTASPANNQQFPPNPMTSQFQQMSYPDVMVVGEPSMMGSEFGENDERTISRVENSQYDPNAMQMQSLGQGPNSSMNINGRNMMNQHHPGMQPPPGQQHMPPHSMGSQMPTSMHNPMHMPPGSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPMPNQMPGGMQMNQMPPPNYSQYTGGPPPQWPPPNSA........................................ 625
8 -9.180[K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog  ali follow..  24  11......................................................SLRTAINRIVLVKLKDGSEYIGKLEQT----DGTMNLVLRDCTEIREGTSEPVAKY-----GRVLIRGSNILFISVDY.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 79
9 -9.120[P] KOG0056 Heavy metal exporter HMT1, ABC superfamily  ali follow..  12  548.................................................ENMFDLLKE---GCSPLLTAGGGIFSNVTFGYSPEKIRNVSFTVPAGKTVAIVGPSGAGKST-----RLLFRFYDVQTILIDGQNIKLVQQQSLRKAIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPE-------------------KYET-KVGER--GLRLSLDEA--TSALDHTERNIQAALARVCAVAHRLSTIIHADEILVLQQ-GSIAERGRHEEDGIYADMWQQQLKNLDAEQSGGSDNGDASAESGSEKRRAGGAGGPSGTGTGGAHFRAGHAHGGAR................................................................................................................................................................................................................................................................................................................................................................................. 866
10 -9.080[A] KOG3482 Small nuclear ribonucleoprotein (snRNP) SMF  ali follow..  22  8......................................................FLNGLTGKPVLVKLKWGQEYKGFLVSV----DGYMNMQLANTEEVIEGSVTGN-------LGEVLIRCNNVLYIKGME.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.