Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [S] COG5197 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310
# Score Template Links and tools%idFirst MSYNPYAYATSEQNGVNDRFSHTPQQQRPMQIPRNTPVNGQGNANMNANVNGSGGGFPFQDPRGSMAFQLGQSAFSNFIGQDNFNQFQETVNKATANAAGSQQISTYFQVSTRYVINKLKLILVPFLNGTKNWQRIMDSGNFLPPRDDVNSPDMYMPIMGLVTYILIWNTQQGLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDIHVSISKSTVKKCNYFLFVYGFIWQNVLMWLMGLast
1 -99.800[S] COG5197 Predicted membrane protein  ali  100  1MSYNPYAYATSEQNGVNDRFSHTPQQQRPMQIPRNTPVNGQGNANMNANVNGSGGGFPFQDPRGSMAFQLGQSAFSNFIGQDNFNQFQETVNKATANAAGSQQISTYFQVSTRYVINKLKLILVPFLNGTKNWQRIMDSGNFLPPRDDVNSPDMYMPIMGLVTYILIWNTQQGLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDIHVSISKSTVKKCNYFLFVYGFIWQNVLMWLMG 314
2 -75.500[S] KOG3094 Predicted membrane protein  ali follow..  25  2................................................AMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNISRY--FSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGSYKPPIYDINAPDLYIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGS---GEAPLLDIVAYAGYTFTGLCLAVLGKIIW--GYSYYVLIPWTCLCTGVFLVKTMKRVLFAESRSYD------------SSRHHYLLIFVALAQFPLLIWLG 251
3 -39.100[S] KOG3114 Uncharacterized conserved protein  ali follow..  14  2MMSGGSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDADVLYALLANLIDFQPVADTFSRPVNGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTA--------------NNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKNLVTWSAGVFYGYVTIVPLALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPL-EIFRWVIAGLAGFMSATFVALNLKAHI----------------NSAGERWFLIVVSIFLLQLALSVVL.. 289
4 -21.800[U] KOG3103 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  11  1......MSQFGGPNDFYGSAPSADASYNFDMPEFGQELNFQTFDNTQASVPPNYDASYAQPPSQGLGGFYDPTAYTDTSYGQDKSGKSAAGGGAGNEFDDEPPLLEELGINPNHIFQKTLAVLNPLRGTD---------------QQILQDTDMAGPLVFCLTLGGFLLLSGKVT-----------FSYIYGIGVMGCIFFYCLLSLMV--SRSQVTFGAVASVLGYCLLPMVVLSGINILITIQGTLGLIVSGISIFWCAISASKL------------------FATAFSMDHQQLLIAYPCAVLYGGFALIT 262
5 -18.700[U] COG5080 Rab GTPase interacting factor, Golgi membrane protein  ali follow..  11  1............................................MAYYNNPANLQYYDYSYTADNSFNTQSRAAGFYDEPLHEPLSQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVD---------------VHIMDDTDMAGPILFCLLFSTFLSLHGRSH-----------FGYIYGIALLGSLSLHFVLRLMS---AKNLFFTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACIWCTYAASAM------------------FVGILQVNNMRFLVAYPIALFYGVFAVIT 223
6 -17.100[S] KOG2946 Uncharacterized conserved protein  ali follow..  13  4..................................................................DVNTSPSLEGDMSIPGKRTTTATSASGVPEYNTLDEPIRETVLRDIRAVGIKFYHVLYPK-----------------EKSSLLRDWDLWGPLVLCTFMATILQGSSTADSMSDNGP---EFAQVFVIVWIGAAVVTLNSKLL----GGNISFFQSVCVLGYCLTPVAISLIVCRVILRFVTTTIGFAWATYASFVFL------------------------GQSQPPHRKPLAVYPIFLFFFIISWLV 214
7 -9.510[T] KOG2322 N-methyl-D-aspartate receptor glutamate-binding subunit  ali follow..  8  1MTQGKLSVANKAPGTEGQQQVHGEKKEAPAVPSAPPSYEEATSGEGMKAGAFPPAPTAVPLHPSWAYVDPSSSSSYDNGFPTGDHELFTTFSWDDQKVRRVFVRKVYTILLIQLLVTLAVVALFTFCDPVKDYVQANP---------------YWASYAVFFATYLTLACCSGPRRHFPWNLILLTVFTLSMAYLTGMLLGITALVCLSVTVFSFQTKFDFTSCQGVLFVLLMTLFFSGLIQYVPWLHAVYAALGAGVFTLFLALDTQLLMGNRRHSLSPEEYIFGA-------NIYLDIIYIFTFFLQLF... 311
8 -8.680[S] COG3216 Uncharacterized protein conserved in bacteria  ali follow..  8  62..........................................................................................................................................................FFPLGSHFAIAAIVCWLI-SGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPP..................... 199
9 -8.270[S] KOG3269 Predicted membrane protein  ali follow..  10  1..........................................................................................MANQGAKKRKDENARHMAKLRLIMILCNIRYLYQYGTKNPLNLIFRSRKFQCLADFVSMNSRIDVFGNMCLQILYVLVRVII---------SHSSHTWKNWIGLVLTSLGYGIPYKLLHQMAKPSVS-MSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYLVIPAFGAYKASGLIKGLLSHGSEGGVEDEKTRKKREKMERKA................... 206
10 -8.110[S] COG2881 Uncharacterized protein conserved in archaea  ali follow..  15  14...............................................................................................................................................................................KSFFIAGAYIQLVSTFLGFFATWLIIAAVMHGLSAFFDGRGEFRRTFEFAGYGFMLSLLGSAVT-----------------IPVSLKYVEEATIPTIDLQELS-ANPEILVKSLVSHFPDSYVYSAIFLNLAVTAW... 131
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.