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Query: [S] COG5352 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNWTDERVELLRKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLKLSGRGRATATPARQKKTTQGSTVQKSVARAASTRHVTTSIGATALQTQFDAEPVARHYIRPVENVVVPISRHLQLVELTERTCKWPNGDPLSEDFNFCGNEAAETGPYCKYHARVAFQPAAERRRNRLast
1 -80.600[S] COG5352 Uncharacterized protein conserved in bacteria  ali  100  1MNWTDERVELLRKLWSEGLSASQIAAQLGGVSRNAVIGKVHRLKLSGRGRATATPARQKKTTQGSTVQKSVARAASTRHVTTSIGATALQTQFDAEPVARHYIRPVENVVVPISRHLQLVELTERTCKWPNGDPLSEDFNFCGNEAAETGPYCKYHARVAFQPAAERRRNR 171
2 -11.000[R] KOG4834 Predicted DNA-binding protein, contains SANT domain  ali follow..  13.KWTDEEIDMLHSSIMRSDDLTKISLSIKNRTVSQIRQALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQPIVQHVQLVAQPKQIILHPQSNTTTTG......................................................... 126
3 -10.500[K] COG2345 Predicted transcriptional regulator  ali follow..  14  15...GDTRRKILLILLERAVIASDIAEQL-QLSTVGVLDNLVEENLAEAANPRQNPYEPKMRGRPAKTYRLTDKGRSEVGGDDAVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEAFSLCQHHC--PISTVATEFPELCEATIADGHGICTTNIPLTPIKHS...... 228
4 -10.500[S] KOG2811 Uncharacterized conserved protein  ali follow..  17  17..........................................................................................................................ERLQCEYFMEKKK----RRCGMTRSSQNLYCSEHLNLMKKAANSQVHNK 61
5 -10.300[S] COG1710 Uncharacterized protein conserved in archaea  ali follow..  11  92.KYSYKTLMMIEELLKKGKTPREISRDL-GIPIRTLYYLLKKRE............................................................................................................................... 133
6 -9.740[L] COG4584 Transposase and inactivated derivatives  ali follow..  17  3...SYEDYMEVQILRRQGCSLRAIATET-GMAVNTIRKYLVSGAPERKPREPVVGK................................................................................................................... 54
7 -9.310[S] COG5484 Uncharacterized conserved protein  ali follow..  14  3.....DKHIQAYKDYAKGMKYKDLAEKY-GVSVNTIKSWKQRHGWQRKKGAPLKKGVHTKKVGAPLGNKNALGNNGGAPK........................................................................................... 76
8 -9.180[S] COG2739 Uncharacterized protein conserved in bacteria  ali follow..  23  20...TTKQKSYVSFYYLDDYSLGEIAEEF-EVSRQAIYDNIKR................................................................................................................................. 57
9 -8.920[S] COG1356 Uncharacterized protein conserved in archaea  ali follow..  29  6....TEQQIKVLVLRAKGLKQSEIARIL-KTTRANVSILEKR................................................................................................................................. 42
10 -8.150[S] COG3369 Uncharacterized conserved protein  ali follow..  30  59..............................................................................................................................CR-------------CGS--SENKPFCDTHSKIGFDGSETASRK. 88

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.