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Query: [S] COG5353 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKRKMTRHSQIIIGILVIILAIYLSISLFFWKSLNPYHSVRAQAIDIATEKTDLVKATGFDIAATDTVTYSIVGLNKANQEIGILIPKKSGKIKEVKLSQGVSPASLTTKDTKSVVLALYKGKPAWEVNNSNGFKVYDFESGKELILast
1 -77.100[S] COG5353 Uncharacterized protein conserved in bacteria  ali  100  1MKKRKMTRHSQIIIGILVIILAIYLSISLFFWKSLNPYHSVRAQAIDIATEKTDLVKATGFDIAATDTVTYSIVGLNKANQEIGILIPKKSGKIKEVKLSQGVSPASLTTKDTKSVVLALYKGKPAWEVNNSNGFKVYDFESGKELI 147
2 -10.300[S] COG3212 Predicted membrane protein  ali follow..  16  1........MRKLMIPIVAGVVIAGGVTVGAQVFAKEDDSATLAEASDIALERAGNGVVTEAEKDRDNGRVVYEIEVKNDDDEYDFKIDQQTGEILKEKQEQ-ISMDEAKEIKIDDIELERENGSLVYEVEIESD-VYVDAMTGNVL. 188
3 -8.270[R] KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx  ali follow..  5  1.............MASTQVVFIVTLFLYLLITRWRRKNEKSFIASEEPKQPEWRDYTPAELKEYNGSKNFLAIKGT-TMGSKFYAFAGHDASRGLAFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAV----GRLI. 145
4 -7.880[S] COG3111 Uncharacterized conserved protein  ali follow..  13  1MKK---------FAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLR-DDTWVTLRGNVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEI.................. 120
5 -7.350[S] COG4853 Uncharacterized protein conserved in bacteria  ali follow..  7  144.......................................................QLINNNMVLFDEAGQIIFYLDKDDRQTWMSKQDDLKDKTNLMSSTDALHGELKQDSDVVSATFGYYTTFPVWCFEVKHSYVLVNAKDEQVI. 257
6 -7.250[O] COG2143 Thioredoxin-related protein  ali follow..  8  1MFSLSYVSK---KFLSVLLLISLFLSACKSNNKDKLDENLLSSGSQSSKELNDERDNIDKKSYAGLEDVFSDNKSISPNDKYMLLVFGRNGCSYCERFKKDLKNVKELRDEHFSAYYVNISYSKEHYAVQSTPTIVLSD-KTGKTIY 169
7 -7.250[NU] COG4726 Tfp pilus assembly protein PilX  ali follow..  13  1MRMTHLGPYRQLIVILLLLLVMTLIGLAVLRTTLLQERMSANLRDRSLSFQEAALRDAEE....................................................................................... 66
8 -7.010[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  12  1MKLKK-----------VAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAMKDKVGTGPSLVKGQSASSVEVVSGATH. 144
9 -6.910[T] COG3322 Predicted periplasmic ligand-binding sensor domain  ali follow..  11  1MNLNNFSLRWLTTLNALAVVLGFLMFYLTFKYFWLQLQQAELQRVETLLSLERKAMGASLADYAAWDEMADFIAKPTLE-------------------TQSNIGEHAFSSQFLDGVFIYDPEGNLVWGKKYD............... 123
10 -6.720[S] COG4698 Uncharacterized protein conserved in bacteria  ali follow..  7  1MKKKSNLNWWKWSFLCLLAFNTAFLMV--IASRLIQVREPESELIAKKPVKNIKIGTFVTTREQLNETVASYLKDYQTEKMSYKFYATSSSILFEYIYFQPHRLENGAVQLQVISFSVG............................ 129
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;