current user: public
If you have questions about the server, please let us know.

Query: [M] COG5434 Endopolygalacturonase, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530
# Score Template Links and tools%idFirst MILSHRYTLIALAAAILSSGAHAAGASVTASWGNVAEPSLPADSAVCKTLAATITPVSGSIDTVDGNPSNSQPDASRIQTAIDNCPAGQAVRLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADFDNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFYSTAKGSLYPNFTNIVVKNFHDLGSAKGIARTMTFLGYEAKKRTNPLTLTLDNVVFDGTQPAFDVAHNGGPASPNGTHFTFGGNGPVSFANAIVTSSTTDVTVTGTPGTAAAVDCSNAFVPLKSVAPTSPILast
1 -118.000[M] COG5434 Endopolygalacturonase  ali  100  1MILSHRYTLIALAAAILSSGAHAAGASVTASWGNVAEPSLPADSAVCKTLAATITPVSGSIDTVDGNPSNSQPDASRIQTAIDNCPAGQAVRLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADFDNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFYSTAKGSLYPNFTNIVVKNFHDLGSAKGIARTMTFLGYEAKKRTNPLTLTLDNVVFDGTQPAFDVAHNGGPASPNGTHFTFGGNGPVSFANAIVTSSTTDVTVTGTPGTAAAVDCSNAFVPLKSVAPTSPI 531
2 -10.600[P] COG3420 Nitrous oxidase accessory protein  ali follow..  15  1MVLPRLFRTAGIMSLLAAALCAGAQARQI-----------------------------------------DVAVGESVQAAIEKAEPGDVVRL-----RAGRH-EGAVVIDRAIELTGEPGAVLDGLGTGN-----------------------AITVNAPNAIVRG--EVHGSGD------------------------NLPDLHSGIFVSRTATGARVENNRLIGN-TYGIYLHGAADSIAIGNEVLGRR-------------------------GVRMAETGSGVSVWNAPGAQVVGNTIRYGRDGIYTNAS---RKNIFRDNVMEDVRFAVHYMYTDDSAVIGNVSRNNSV-GFAIMYTNRLKILNNVSEGDRDHGLLLNYANSSIITGNRVVG..................................................................................................................................... 273
3 -9.010[G] COG3866 Pectate lyase  ali follow..  15  162................................................................GYNDDGTVASNAEILYITASNVNTVTENVVTNAKGTKTTCTGL-KGYDKSPLIIRMIGEIKASDITG-----------------LNEHTYIQLKGCYNVTFEGVGTAYGWG----------------------------------FLIRDARNLELRNVGIMMF-------------------------------------------------------GDDAISLDDNQNIWVHNNDLFYGDGSCDIKQD---STFVSVSYNHFHDSGKSSLCGMQDTQNYYVTYHHNWFDHSDS--------RHPRIRVGSVH--VYNNYFDGTKGASAFVEANY.................................................................................................................................. 409
4 -6.140[S] COG4050 Uncharacterized protein conserved in archaea  ali follow..  14  1.......................................................................................................................................................................................................................................................................................................................MKIAIFPPNSLILADLVERRGH-LVIQKEIKKKVTDPEIDSPPFNITEEDPIRGLKYAAIEVPSGVRGRMSIFGPLIEEADAAIIME..................................................................................................................................... 88
5 -6.020[G] COG4677 Pectin methylesterase  ali follow..  10  85.................................................................GPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEY-------QGTVYV-----------------------------------------AAPGGITLYGTGE--KPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQ---NNGLQLQNLTIEN------------------------TLGDSVDAGNHPAVALRDGDQVQINNVNILGRQNTFFVTNSGVQNRRTLVTNSYIEGDVDIVSGR------GAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGD.......................................................................................................................................... 338
6 -5.530[DO] COG5156 Anaphase-promoting complex (APC), subunit 10  ali follow..  14  123...................................................................................................................................................................................................................................................................WKPSSFKLGNPVDFALDDNYDTFWQSDGLDIMFSKRMDICVMAIFFSDESVKVYAGHSPSDARFYKMLEVRNVNGLRFLDNREDDQLRLLFPVNHENGKDTHL-RGIRLYVPSNEPHQDTHEWAQTLPETN............................................................................................................................................. 274
7 -5.290[R] COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily  ali follow..  11  28................................................................................................................................................................................................................................................................................................DVIVGAGVYIGPLASLRGDGRLILEAGSNLQDGCIMENGHIGHGHGCVVGRDALVGMNSVIMDGAVIGAAMSFVKAGFQGEARQLLVGSPARV-LRQVTDQELHWKHLNTKEYQDLAIRCRTGLSETK................................................................................................................... 174
8 -5.270[R] KOG1777 Putative Zn-finger protein  ali follow..  13  506...................................................................................EVHHGYTGGIYVHERGRGQFMENRIYANAYAGIWITSHSEIFTGQQGGVYIFGEGRGLIEQNNIYGNALAGIQIRSQSDPIVRLNKIHDGLHGGIYVHEKGRGLIEENEVYGNTLAG---------IWVTTGSSPILRKNRIHSGKQVGVYFYDQGHGLLEENDIFNHLYSGVQIRTGSNPKITRNKIWGG---------QNGGVLVYNGGKGCLEDNEIDNAMAGVWIKTD----SEPTLRRNKIYDGGGVCIFNRGKGLLEDNEIFRNAQAGVLISTESNPTLRRNRVFDGKSAGIEITNGATATLEENQLFRNKYGG-ATGVTPVQRGNRIYD................................................................................................................ 831
9 -5.060[S] COG4895 Uncharacterized conserved protein  ali follow..  20  8.......................................................................................................................................................................................................................................................................................................................................SISKGLQVDIGKLTRGTVKDILTKS-------NFHPHGIKVRLEDGRIGRDQQIV..................................................................................................................................................... 63
10 -4.960[P] COG1629 Outer membrane receptor proteins, mostly Fe transport  ali follow..  9  7..........LLSETLIKCAGAGASMECKGINGRTARTGLAGWVALLLTTSVSALALNVPATAQTVAQASTAPAAGPLTSALNQLATQTGLQILFDNGKTSRGASGNLTPSQALAAVLAGTGVQSRFAGQNQIALSLAAAPANAAAVAADGTT-----QLQAITIYGS-----------------------------RNATTLASTSSSIGIVNAEQISDGQIRFRRMANVMDGDWADAGFIIRGVSSEGLVPG----------------------GAPLATLYIDGVQQTVRG---ARRGARGLFDEQVEVYRG-----------------QSTLSGRAAMAGAIYIKTKDFMFNTPLVDDQIAIRMSEIQRSKNDINYPTFER.................................................................................................................................................. 344
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 2 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.