FFAS03 results for COG5522

Query: [S] COG5522 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 .`
#	Score	Template	Links and tools	%id	First	`MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRTSLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK`	Last
1	-99.500	`[S] COG5522 Predicted integral membrane protein`	`ali`	100	1	`MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRTSLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK`	237
2	-9.960	`[S] COG4244 Predicted membrane protein`	`ali follow..`	9	21	`................................................................................HFVIGMVFFAYISELVGYLQKKPRFFEWNWLTAAIAIFFAVIFGEFEAALAMPYPAAQPALDHLSAILAGLTAWRGVLRVRNPLKTSLPFLMLATVFMVLVCIQIFLGSLVDW............................................`	143
3	-9.360	`[S] KOG4418 Predicted membrane protein`	`ali follow..`	7	121	`................RTHFYGLQLNCTGNNHRNLQEYRVRKAQH-REQDMLKYLAAMLALTITGLMAWTVGSWGDTALWRTAWPQCLMQGWHVIWHGYE-------LFLLYAV------RLCYKARNSDWLERWQFTVAVCLEAVITLMANLIRYSIRNSGRADTLFIVSFVHLQLTVSVNIVIIVAPKFYLSNGEP.......................................`	292
4	-9.270	`[R] COG5524 Bacteriorhodopsin`	`ali follow..`	12	38	`.....................VFAVFGFILLCYVVMFFIAENKGSRLTRYALAPAFLITFFEFFAFFTYASDLGYIAWFLSWPCLLFLIELAASTTGENDDISALDMVSLLIQIVGTLFWVVSLLVGSLIKSTYKWGYYTIGAVAMLVTQGVICQRQFFNLKTRGFNALMLCTCMVIVWLYFICWGLGGNRIQPDGEAIFYGVLDLCVFAIYPCYLL....................`	267
5	-8.200	`[W] KOG3989 Beta-2-glycoprotein I`	`ali follow..`	12	7	`....................HLVSAVLYAAVCYRDTTIVTGALLPIPYQT--VWLTIIDLYMQLLYHTIGFILAVVSPNKRHIIFDYWARALTGPIGVAVT-------VLFWGLFLFDPATLARDEMAMKILTLFWFNHGL-HTLPAITAHLAIYNHTSFSTSAILKGIAVFVTLYLIDLHYVFYTSGF-YPILGELAAPFRLV--------FIAACMFIVYLGYVWLSFLGALV..`	210
6	-8.200	`[S] KOG4290 Predicted membrane protein`	`ali follow..`	11	209	`................FSFDE-LFLLTVVAYAILSIIQSGANFKNRQMPPRSVILSRIITMKLIGYSLQCFNVLLFAYDGQ--LRNTSVQVHCLLLIMLAKGWDISYCVIMWGVLAGLDTVLF---IYSAWPGHGMILIRIIYAIWFLIEIRKLIDSEQSRQKAEFLAHFGAGFLV----------------WFVSLPMIGIVASFVSQLWRFSLILALTTFSNFVALSCLVHQF..`	444
7	-8.130	`[S] KOG2568 Predicted membrane protein`	`ali follow..`	10	148	`....WKNPDGYLPGRMAPLVNFYVYMSLAYLLLSAVWFFQYLRFRMDILPLQHCITAVILLGLLEMLFWYLDYANFNHTGMRPLALTTWVVTIGAL-----RKTVSRILILCVSMG--FGVVKSTLGGLTSKVLLVGVTYFIASEILDIAEHVGIIDDMSGRSKLFLVLPDAFLDAFLILWIFTSLSKT----LQMKRTSVKLEIY-----FSNALAVMVVASVAWIVYEVYFKATD`	369
8	-7.840	`[S] KOG4502 Predicted membrane protein`	`ali follow..`	5	529	`..........................................NKPKTVKRSSLVYQILLSLQKTLSIVYFLVIFILYFYKGLPYPRYVRVMEFFVIIPFI----IEYLRINWGSRGNLLSTVLSIPIIIILVYLEFFQNYVLFIEEIFTYVMG---------------FFVILETLLSLVLTITFSSSG................................................`	667
9	-7.660	`[O] COG1612 Uncharacterized protein required for cytochrome oxidase assembly`	`ali follow..`	12	120	`....................HRLLARSVGLVFALPLLFFWVSRRIERGLGPKLVGILLLGGLQGAIGWWMVASGLVDRVSVSQYRLATHLTLAALIFTATMVVFIVLLALIQIYLGGLVAGLDAGLSYNTWPLMD-KTVQFVHRLGAYTVFAVALWHMIATRRRLPGSTHARRATLLFVLVLVQASIGIGTLLMQVPLHMALT---------HQGFALIVLGFAAAHWRGT......`	363
10	-7.600	`[T] KOG2290 Rhomboid family proteins`	`ali follow..`	9	641	`LLPFLNPEVPDQFYRLWLSLHA--ILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQ-FGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFLLPWID-----NFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYP--FLTCIPFTDKFCE................................`	846

FFAS is supported by the NIH grant R01-GM087218-01

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