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current user: public |
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Query: [R] COG5614 Bacteriophage head-tail adaptor, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . | |||||||
# | Score | Template | Links and tools | %id | First | MAISAGRLTQMISVLNPVLTRNAAGEMTEEWVSCGKIHADIRGRSSRERMQSGAEMAQAEIRIWVRGQSGREITAASRLHVLSGPWRDRILNVVGLPVPDVTGGRLEILCRLGGEK | Last |
1 | -79.100 | [R] COG5614 Bacteriophage head-tail adaptor | ali | 100 | 1 | MAISAGRLTQMISVLNPVLTRNAAGEMTEEWVSCGKIHADIRGRSSRERMQSGAEMAQAEIRIWVRGQSGREITAASRLHVLSGPWRDRILNVVGLPVPDVTGGRLEILCRLGGEK | 116 |
2 | -4.740 | [R] COG5633 Predicted periplasmic lipoprotein | ali follow.. | 11 | 66 | .....NERQEPVTVHYRFYWYDARGLEMHPLERPRSV--TIPAHSAVTLYGSANFLGAHKVRLYLY.................................................. | 124 |
3 | -4.740 | [P] COG3420 Nitrous oxidase accessory protein | ali follow.. | 15 | 50 | VRLRAGRHEGAVVIDRAIELTGEPGAVLDG-GNAITVNAPNAIVRGLEVHGSGDNLPDLHSGIFVSRTATGARVENNRL..................................... | 130 |
4 | -4.590 | [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 | ali follow.. | 7 | 91 | LKIKLPLIPADVDKIVFVVTIHDAQARRQSFGQVANAFIRLVNDDNGVEIARYDLSEDASTETAMLFGELYRHNAEWKFRAVGQGYAGGLSSVCA..................... | 185 |
5 | -4.550 | [J] KOG3403 Translation initiation factor 1A (eIF-1A) | ali follow.. | 11 | 1 | MPKNKGKGGKN---RRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARS............ | 102 |
6 | -4.300 | [R] KOG3328 HGG motif-containing thioesterase | ali follow.. | 10 | 164 | VHAEEGNLRVEFEVEKDQTNQFETGGCTAALIDCFTTGALLLTKEAR---------PGVSVDLHITYLTAANIGETLVLNSTVIKQGRSLGFTKAELYRKRDNAMI.......... | 262 |
7 | -4.210 | [S] KOG4781 Uncharacterized conserved protein | ali follow.. | 7 | 131 | ...STRQVYAIAHVGKDVGLDDDHPGLIAT----------MDEVLAICSFLSLPNKIAVTANLKLSNPTKAYTNHFYILRSHLEWTKGRKATAYMLDNEDPSKSTCVAIAD..... | 235 |
8 | -4.100 | [R] COG2389 Uncharacterized metal-binding protein | ali follow.. | 11 | 1 | ..MPAGKIHDRITLGATPAVMDIHSCQYKRWGWLRWVWLPYRHFIPHRSPLSHGFLIGTILRL..................................................... | 92 |
9 | -3.930 | [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit | ali follow.. | 10 | 2 | SRISIEEVKHVAHLARLAITEEEAKMFTE---QLDSIISFAEELNEVNTDNVEPTTHVLKMKNVMREDEAGKGLPVEDVMKNAPDHKDGYIRVPSILD.................. | 96 |
10 | -3.900 | [R] COG3489 Predicted periplasmic lipoprotein | ali follow.. | 11 | 46 | LHQHAEALTRAMHTLCKAPSQGELDAARAEFSATVYAWSSAEIIG....................................................................... | 90 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |