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Query: [A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily), from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLGRGYQVKGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTLGIPTDGGDGTMATAAAAATAFPGYAVPNATAPVSAAQLKQAVTLGQDLAAYTTYEVYPTFAVTARGDGYGTFLast
1 -150.000[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)  ali  100  1MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLGRGYQVKGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTLGIPTDGGDGTMATAAAAATAFPGYAVPNATAPVSAAQLKQAVTLGQDLAAYTTYEVYPTFAVTARGDGYGTF 586
2 -82.400[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)  ali follow..  16  47.ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRD--PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM---RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEIS--GKIIFVGRAQKKVERQAELKRKGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN----LAGKITGMLLEIDNSELLHMLPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS........................................................... 644
3 -67.100[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)  ali follow..  14  57.RGGAERGIAPAQQPYDNNGGHRSGGGGGRSGGGGTSFNGAAFTDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS------GKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAV-HGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIV---DEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFLLTPKPLICEVLEPRDEDDG-----LAERMIPRTPGLSKERELGPRFPTPNSFEYVYGQKRRAQLDEELRESRRRLESDMELAYQDYQAQMLREDLQRRQQELERLEAARRERMRGLGGP...................................................................................................................................................................................................................................................................... 381
4 -64.100[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)  ali follow..  18  4.........IISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTG----ATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKTGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL--VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS...................................................................................................................................................................................................................................................................................... 380
5 -63.000[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)  ali follow..  15  40MDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMTGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF--------PDKGYSFVRFNSHESAAHAIVSVNGTTIE--GHVVKCYWGKETLDMINPVQQQNQYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQ-GFNQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAGYETQ........................................................................................................................................................................................................................................................................................ 375
6 -62.200[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)  ali follow..  16  49.STAAKLGLPPLTPEQQEALQKAKKQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA--RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVGKAVTPPMPLLTPATPLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA................................................................................................................................................................................................................................................................................. 559
7 -58.800[R] KOG0110 RNA-binding protein (RRM superfamily)  ali follow..  14  400.LTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVL-----PPSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYLEWAPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRENPREFKSLGYGFIQFKKSSVAEHALKNLQLTHID--GNPVELKRSDRQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIDAHRGFGFVDYMSKAEAKRAFDALSASTLYGRRLVLEWSANDDNQDVEELRKRTAA............................................................................................................................................................................................................................................................................ 881
8 -57.500[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)  ali follow..  20  9................................................DQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR---GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQMEGCSSPMVVKFADTQKDKEQKRMAQQANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK...................................................................................................................................................................................................................................................................................... 480
9 -56.200[R] KOG4733 FOG: RRM domain  ali follow..  12  8QMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSN-SGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQ--DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR---DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK--TPPGVSAPTEPKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT---TAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQ.................................................................................................................................................................................................................................................................................... 310
10 -53.500[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)  ali follow..  21  2..........YIKMATLANGQAASLSTNGLGSSPGSAGHMNGLSHSPGNPSTHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILR---GPDGNSKGCAFVKYSSHAEAQAAINALHGSQMPGASSSLVVKFADTDKERTMRRMQQMQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR...................................................................................................................................................................................................................................................................................... 484
11 -51.900[A] KOG0131 Splicing factor 3b, subunit 4  ali follow..  15  2.................................TTRIAPGVGANLLGQSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKNLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIM-RDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS--NRQITVSYAYKKDTKGERHGTPAETLFAMGPPSSAPQVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQTQPPSWPSQPQQHSMVPP................................................................................................................................................................................................................................................................................................... 284
12 -51.200[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  20  1...........MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGENPTKRYRAFITNIPFDVKWQSLKDLVEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGESTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE---DKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMHVKMDERALPKGDGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA.......................................................................................................................................................................................................................................................................................... 730
13 -49.700[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain  ali follow..  11  213.SEGRRNGEVLVQFSSQESRDLALKR-HRNFLLSRYIEVYKAGLDEFMHFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLK-HRQVIGQRYIELFKSTAAEVQVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIE-SYPSPPISPIVPGQVTQLIIYGIHMSIGVPELVANFTTPEHTVDNVLHLCPGEAILTLRNRGAPPPQTSPLSQISQLSAPNFAAYSHHPQNFPLQ.................................................................................................................................................................................................................................................................................... 609
14 -49.000[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)  ali follow..  12  50............GFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSINLDKNFAFLEFRSIDETTQAMA-FDGINLKGQSLKIRRPHDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLV--KDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLG--DKKLIVQRASVGAKNAQNAANTTQDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRRE.................................................................................................................................................................................................................................................................................... 415
15 -48.500[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins  ali follow..  14  51LNMTDSDSWLSFDESSPNLNKLVIGNSEKDSLE--------------------DVEPDALEILLPEDENELLPGLIDELNFTGLPDELDDLECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAFVEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-------ACKSRGFVMISYYDIRAAHAAMRALQNTLLR--KRTLDIHFSIPKENPSEKDMNQ-GTLVIFNVDTTVSNDELLQLFGAYGEIREIRTPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTEVTN..................................................................................................................................................................................................................................................................... 365
16 -47.700[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)  ali follow..  12  101.DHRREDRVHYRSPPLATGYRYGHSKSPHFREKSP------REPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKNRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM--KDSDTGRSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVGHVTERLD-------GGTDITFPDGDQELDLGSAGGRFQLMAKLAEGA-GIQLPSTAAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQ.................................................................................................................................................................................................................................................................................. 411
17 -47.100[R] KOG0118 FOG: RRM domain  ali follow..  13  22.PPPSSPPSSMTSQDSGVSSDDQNHH------SRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRIC----GDPNSVLRFAFIEFTDEEGAMTALN-LSGTMLG--FYPVKVLPSKTAIAPEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRQHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRSPRHP................................................................................................................................................................................................................................................................................. 356
18 -44.500[A] KOG1190 Polypyrimidine tract-binding protein  ali follow..  16  92....KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLVSNLNPERVTPQSLFILFGVYGDVQRVKILF-------NKKENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITLSKHQNKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKQKDRKMALIQMGSVEEAVQALIDLHNHDLENHHLRVSFSKST.......................................................................................................................................................................................................................................................................................... 549
19 -42.400[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins  ali follow..  16  4................................................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGIRFIYTREGRPSGEAFVELESEDEVKLALKK-DRETMGHRYVEVFKSNNVEMDVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVD--FQGRSTGEAFVQFASQEIAEKALKK---HKERIGHRYIEIFKSSRAEVRTHYDPPRKLCVHMRGLPYRATENDIYNFFSPLNHIEIGPDGRVTGEADVEFATHEDAVAAMSK-DKANMQHRYVELFLNSTAGASGGAYEHRYVELFLNSTAGA.................................................................................................................................................................................................................................................................... 387
20 -39.800[K] KOG4210 Nuclear localization sequence binding protein  ali follow..  13  84..............AEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRSNAMKNKGFCYMFFKNVEQMKAVLE-LSESHLNGRNMLIKDSENPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMA--TFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIA--GRPLRMEYGEDRSKRQVRKKVESSFDISNNKGYDRAGQDNGSKPEYKRSNANRRPRTKSSVALATAQRGSAAIVPSQ--------GKKVKFD............................................................................................................................................................................................................................................................................................... 403
21 -39.400[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)  ali follow..  20  2...........................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR--HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLR--------------------------------------------------------VEFPRTYGGRGG--------------------WPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV-QKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGS.......................................................................................................................................................................................................................................................................... 199
22 -39.000[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19  ali follow..  13  10LVFLASKGFVDILYWVYRFQASSMAFCTKL---GGHWKQGVNVPVSSMGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLFVDAFLMKKKNAALNRKIWSRRSTILPEYV----DSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRK............................................................................................................................................................................................................................................................................................................................................................................................. 236
23 -37.800[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1  ali follow..  12  3...........TTVSTGATAVATLRE-TSPPVDGHEEARLNADSDD-GSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPTKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDK--ATQRHRGFGFVTFDSDEVADKV---CEIHFHEINGKMVECKKAQPKEVMQLNKSRAAAARNLYGMPPE-TLLAYAQYLPRFGGNLMYPNNMPGGYSGLSTPGGSSNRPPHQ.............................................................................................................................................................................................................................................................................................................. 285
24 -37.700[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B  ali follow..  20  3................................................TADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVALK--TPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDC-----------------------------LAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQPMVISFAKK........................................................................................................................................................................................................................................................................................... 232
25 -37.600[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)  ali follow..  13  550............GFKAPLPPSNAKSSSAVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANS-DLVHRGFAYVVMENDQKAQQALL-KDRVPVKGRPMFISANDPEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRV---THKDGKPKGIAFVDFDTEASAQKCVASGDKLMLR--ERELEVALSNPPVKKDKSHGKPAAI--LEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQFRKMFMKN..................................................................................................................................................................................................................................................................................................... 836
26 -35.800[K] KOG1548 Transcription elongation factor TAT-SF1  ali follow..  12  42KMNKAGSTGAEVSDVTAEATEGKES-SNGEDRHTKRLYES-KSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKIKIYRTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDK------KKRFNKIVVLKHI-----------------------------TLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEEDEEKR...................................................................................................................................................................................................................................................................... 355
27 -34.800[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  15  55.GEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 192
28 -33.600[R] KOG0226 RNA-binding proteins  ali follow..  12  133LYETPAVNAIPQELLRTQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERN--IDVIKQKRKQKKELGIL.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 302
29 -31.600[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)  ali follow..  16  2.......................................................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM-------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGRLVIDNLSTRYSWQDIKDHIRKLGI------EPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRS.................................................................................................................................................................................................................................................................................................................................................................. 202
30 -30.700[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains  ali follow..  12  246.LLRIHGAFRTKRFSVRDKEDQWTVSVQRQLVYRPSTEAGHNELPPPLPPRGACPDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII-------KNYGFVHIEDKTAAEDTIHNLHHYKLHGVNINVEASKNKSTKLHVGNISPTCTNQELQAKFEKYGPVIECDIV----------KDYVLIHFIHMECCPQARLRTAPGMGD--QCGCYQCKKEGHWSKECHCTTHAEENHLSWWNLEKGWRDLSELDSSVEEMICLRNGAASVFKKKEWSTQGEENK--QDRNGPVTQADDLEIEQGTPTSKE....................................................................................................................................................................................................................................................................................... 693
31 -28.900[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  13  1......................MFASVELSSYRDQHFKG----SRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVERGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTDNR............................................................................................................................................................................................................................................................................................................................................................................................................................ 154
32 -28.700[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)  ali follow..  11  47..KFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKKDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKARNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQ--KTGVSRGFGFVNFVSREDAQRAINKLNGYGYD--NLILRVEWATPRPT............................................................................................................................................................................................................................................................................................................................................................................. 294
33 -28.400[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains  ali follow..  10  216...............................................DWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYLVRTMTKFDKTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAKGDP---------------------------------AAGSGNKGDDWSMNNFVKRQTCFKCEISKDQSM------------ELEKLGAHMVGMTPCDTLLIRGLPDGINNSLIFDSLGALVCLSSISMIKSKRFAYLQMKSADEAKMLLNLTYKSRIKDKDVQVSWCRDSMSKLIQQQMTMLTAGPGKNS...................................................................................................................................................................................................................................................................... 461
34 -27.900[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  10  17.MTGDDADLSAIELNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRSGHPKGFAYVEFTEKEGMQNALA-MTDSLLRGRQIKVDPKRTNKKYVYAGGFRPRGRGARRRPGFAPY........................................................................................................................................................................................................................................................................................................................................................................................................................................... 205
35 -27.500[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  24  2..................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPTGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRR................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 89
36 -26.500[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)  ali follow..  15  441.........................................CFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKASYFPPKGYAFLLFQDESSVQALIDADGKLYLCVSSPTIKDKPVQRKTIFVGGVPRPLRAVELAMIMDRYGGVCYAGIDT--DPELKYPKGAGRVAFSNQQSYIAA---ISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGG-PFFCANVTCLQYYEFHKPLVKEGGDRPRHISF............................................................................................................................................................................................................................................................................................................................ 709
37 -26.300[A] KOG4207 Predicted splicing factor, SR protein superfamily  ali follow..  17  6...............................................PPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRD................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 96
38 -25.800[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  16  5LDIDNAE-----EFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 155
39 -25.200[R] KOG4454 RNA binding protein (RRM superfamily)  ali follow..  17  2............................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV-RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQE................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 93
40 -24.900[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)  ali follow..  18  10.........................................GFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRIPNMPDLLPRTLEMCRVLEVHLLEIIRISNHFHIT--TSKELSILMVTAYGPEYMYSQ....................................................................................................................................................................................................................................................................................................................................................................................................... 168
41 -24.800[R] COG0724 RNA-binding proteins (RRM domain)  ali follow..  17  125.TILSELSALEDPATNEGGVEAASEEKAGQVGGAGSIPGQYVPPSRRAGRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKTGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 274
42 -24.300[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)  ali follow..  19  2.......................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 79
43 -23.900[R] KOG4307 RNA binding protein RBM12/SWAN  ali follow..  14  431.........................................PPVNKPMGAAAVEKFYIELTRLPTDLLRPAALEAFIHPTTLSSVKTVFGPGGIH-MHTIIRLDSIADYATMMRR-QGIKIQQSDKKSFDTAIDGIPVQVTNVPFRMKDEELLEWFSEKVRPAKLTRTF---YSDGNASDRWVAEFSSESLMKRSFGLCTGRTLRLR-LKIEDVYGEGKRQMNEEARPRGTVLSCNGFPKDVTLEDVVEFFNDY-EPDRNSIGVMTGECMLACQNQENARRASMDLDGQKLRNSVISV................................................................................................................................................................................................................................................................................................ 945
44 -23.900[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)  ali follow..  25  3...........................................KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGN--TPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAF................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 94
45 -22.000[R] KOG4208 Nucleolar RNA-binding protein NIFK  ali follow..  20  2..................................................AAFSRSAGPILSLN--QEDAELQKEVAQCDTVTRFRLSRKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKM................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 88
46 -21.800[R] KOG1457 RNA binding protein (contains RRM repeats)  ali follow..  15  13.STGTGSGAGSGGALEEEPQNLGFGRGQSCELEAGIHRG--SVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLT---ARQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAKANT................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 172
47 -21.600[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)  ali follow..  16  1....................MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAP................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 118
48 -21.500[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  12  6............................................................NTYNRQNWEDAEFPILCQLGDNPYVRMIKERFGKTRPFTIFRWCKKTEICQTCARLKNIQVRDAALKVADNMPQSDV---EAAGAVGRSLAANEMLSKLARTAPYYKRNRPHICSFWVKGEC-KPNEPDDPLCEQNIKDRYYGRNDPVAEKIMKRAASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLAGIPPPSAKPNDYFNLRQEQINVMPAGMKLHQLPSNLVPASAYQMYGQPTYAAPYGNATSTALSSSGVNLDSISIPPPPGQVPYPSQDASRMGAV............................................................................................................................................................................ 414
49 -21.500[D] KOG2186 Cell growth-regulating nucleolar protein  ali follow..  19  353.QTKSDSDFEHDKEDIKQLLVAYSKEELVNLIKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKTGRGKGYGFVMFKTRKGAREALKRPEK-RMYNRIVVCNLASEKPGK................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 489
50 -20.600[R] KOG2135 Proteins containing the RNA recognition motif  ali follow..  14  360.................................................AINRDNCTLQVAKIPPEMNTAKLNEHFATFGTVDNIQVRYNGEIDS---ALVTYASKFDAGKAYKSLNNRFIKFVSVAAQNYRKQIQDAKERLTKEKSILSTLVQAQNQHNIILDKWMVKQKELLIKARTS------TDETDKKNATKLVKHLHKKIKACKEEVDGILLKISEKSMVVKMSSVVIVRGVTDE-LVTDLMAHMEKFGEVFDHSVKADDD-AVFPFRKTGDALKAMA--DGKVLNGVDLEMELKTERIEEIPSTDTNMSADQLL......................................................................................................................................................................................................................................................................... 701
51 -19.400[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains  ali follow..  15  7FLDHPGRKHRSRNTEKKKKPRRRERRMKQLVC------------------------KSPWNRFK---GIMLQLRLLLEVTINPDNKLKPDSQGMFPPFSPHHWHLRVKDQRIRDEERS----------------------------------------------------KEMEKGKTRNIHFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQ..................................................................................................................................................................................................................................................................................... 258
52 -18.400[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)  ali follow..  12  1MQSEESHE------LTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEARGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKSSVYYD-------IKYLTKFKWDDLTEEIAYKSAIREQKLNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKRKIQEESGSNAEAAPVFPPRAIFQFRQKKSIENETSQSKPGLSTDFLASVFG.............................................................................................................................................................................................................................................................................................................................................. 264
53 -17.500[A] KOG0533 RRM motif-containing protein  ali follow..  9  66...............................................SRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNEHGDSLGTGDISLTK-RDAERLVQKFSGVALDGKIMKFAVIDSSNMA................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 153
54 -17.300[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)  ali follow..  16  352.EDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNASPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 488
55 -16.800[R] KOG1995 Conserved Zn-finger protein  ali follow..  25  266.........................................VKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVYNIKIYTDEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSSFIILVGNMSFCNAK..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 396
56 -16.200[A] KOG4213 RNA-binding protein La  ali follow..  9  41...KLDEGW-MIKFNDFNVIVEALSKSKAELMEISEDKTKIRPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG---------------------------QKYKETDLLILFKD--------------------------DYFAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKS.................................................................................................................................................................................................................................................................... 331
57 -14.700[K] KOG2068 MOT2 transcription factor  ali follow..  14  65...........IVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLLEYFGQYGKVLKVSMSRTQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTKYCHAWLRNVADSFTKDEIIS................................................................................................................................................................................................................................................................................................................................................................................................................................................ 232
58 -14.600[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  15  85...............................................LTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRNGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQF............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 179
59 -13.700[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins  ali follow..  16  39..................................................RPTISPTLLLSNMHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFR................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 150
60 -13.100[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)  ali follow..  17  61..............TRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQSGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVK................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 184
61 -12.600[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains  ali follow..  17  263.........................................EHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIEEKRGNNDN................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 361
62 -12.500[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1  ali follow..  15  5.................................................DLQDLPSATIACHLDPRVFVDGFESLFRTYDKDITFQYF-----KSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIG................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 92
63 -12.400[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  18  45...........................................QDDQSEFDTGFGNIIVVDHLPVEKLEGVVKKIYNQLGVIKENGLLMPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDR--LMNVKEEWEPPQERP................................................................................................................................................................................................................................................................................................................................................................................................................................................ 162
64 -12.200[R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins  ali follow..  10  1MSKLPSPTLVVLHFETNLDDPCEIHEICWVILDGKTLEK-------------QHCESCSIR--EDSSRHGSLTEAIFTLDN-----IQERLNFQGKPFTFVVMNGRELRVLLPKEARDQGITLPSYMRHPRLFDLSSEYAKVPPYTITLSHIFGKLDV-LPPITESKAIELSPSDAPYITKGLTQCWRLANATTLLLRKAEKDSRGHSLPSVLTQPNCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHG-LKTPEPYKSTGTGFVLFASHEDAADALA-FNGYCLGDRMLEIIPSSTKVLDKASDILIPFPSSKNRPR...................................................................................................................................................................................................................................................................... 343
65 -12.100[A] KOG4008 rRNA processing protein RRP7  ali follow..  10  39................................................KKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSNQGQLTMSITFDKPEAVIQTLALCQDVG---TDFLEDPEFPSVLKDSTTLYRKLFSEEQIQEMADTYVERYDTEQTEARKEAKRKYSGWITVTKAKKAAKSVKLKKED---------------VPLIGGLNNKKKKVDLAYYTFQIKKNRQEKELLKKFEE-DRKRITQLKQARNF.............................................................................................................................................................................................................................................................................................................................. 258
66 -11.300[A] KOG4676 Splicing factor, arginine/serine-rich  ali follow..  22  35.........................................................IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDPVSSRVCFVKFHDPDSAVVAQH-LTNTVFVDRALIVV......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 108
67 -11.200[A] KOG1996 mRNA splicing factor  ali follow..  19  311.........................................................VLLRNMAGEVDEDETKEECEKYGKVGKCVIFEIPGAPDDEAVFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDK................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 395
68 -10.900[R] KOG1855 Predicted RNA-binding protein  ali follow..  16  309..RRNKEGF-VSSFKRVRQGDAVRRKSRKIELNDVGTKVRRIEP---SFDETMPSRTIVACDLPLDLTIEKVSDLFSPCGEIALIRILKPGMAQQKECALVEYLESSSARDARHLNGP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 451
69 -10.600[K] COG5175 Transcriptional repressor  ali follow..  11  65RQNPELNG----KYDDENVRYVTLEELKMERAKLARKEKERKHREKERKENEYTNRKVYVVGINPPVPYEEVAKYFGQYGKINKIVVNRKTPHSNNT-VYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPDSFNKRELHN................................................................................................................................................................................................................................................................................................................................................................................................................................................ 269
70 -9.680[AR] KOG2193 IGF-II mRNA-binding protein IMP, contains RRM and KH domains  ali follow..  14  2.......................................................NKLYIGNLNESVTPADLEKVFAEHKISYSGQFLVK-----SGYAFVDCPDEHWAMKAIETFSGKVELQGKRLEI-KKQRSRKIQIRNIPPQLRWEVLDSLLAQYGTVENC-----EQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQIAQGPENGRRGGFG----PLRLLVPTQYVGAIIGKEGA-TIRNITKQTQ-SKIDVHRKENAGAAEKAI---SVHSTPEGCSSAC............................................................................................................................................................................................................................................................................................ 257
71 -9.560[R] KOG2295 C2H2 Zn-finger protein  ali follow..  11  474..............DGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAIADPLVERR-RRGWITFMRDVNIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPAN-GITAHKQVVRSDIKLCAKIALNL.................................................................................................................................................................................................................................................................................................................................................................................................................................... 625
72 -9.050[R] KOG2891 Surface glycoprotein  ali follow..  12  75..........TIRLEERKRLRAAIQRLDGISLRISGFSYFRDARNMDEMKAGERPDTIHISHLPMRWSENIFKRIFEKFGRVRMVDIPKSMQADINGMGYVQFEEYSSFVRAMDEFRGNKL---------VRKFVDKTQAINICVSFDKQKHLSDSNIQRRERIRKKFIAKAKAEDEER-----EKLKKQQEEELDRERQKQEELKKAEAEKQREREERRKEKHMKKIQERGQVEISQKIRIEERKLMIAQRKLESIRTLEKLFER----IQLKQRDKNRRVKQDDDKDIQRGRLVEKYKAATEKLVCDQRKIVQEIKSNTPLLGL.................................................................................................................................................................................................................................................................... 430
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;