FFAS03 results for KOG0118

Query: [R] KOG0118 FOG: RRM domain, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 .
#	Score	Template	Links and tools	%id	First	`MAVVETGAAATAADAGGVVIQPPPSSPPSSMTSQDSGVSSDDQNHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH`	Last
1	-96.700	`[R] KOG0118 FOG: RRM domain`	`ali`	100	1	`MAVVETGAAATAADAGGVVIQPPPSSPPSSMTSQDSGVSSDDQNHHSRIDQVLRHDQGLYSKIGSHVARSDGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH`	358
2	-65.200	`[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)`	`ali follow..`	14	26	`.MLYEKFSPAGPVLSIRVCRDMTRRSLGYAYVNFQQPADAERANFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF-VHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE----------REAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDNGKSKGFGFVSYEKHEDANKAVEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS-ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVEMNGRIVGSKPLYVALAQRKEERKAHLTNQY`	382
3	-56.700	`[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)`	`ali follow..`	13	11	`................................QVSNGPTSNTSNGPSSNNRNCPSPMQTGA--TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDKDAEKAINTLNGLRLQT------------------KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDTGVSRGVGFIRFDKRIEAEEAIKLNGQKPSGATEPITVKFANNPSQKSSQVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFTNKCKGFGFVTMTNYDEAAMAIALNGYRLGDRVLQVSFKTNKAHKS.......`	380
4	-56.500	`[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)`	`ali follow..`	16	2	`.............................................................ATATIALQVNGQQGGGSEPAAAVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKQTIAHQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSMKHKGFAFVEYEVPEAAQLALEMNSVMLGGRNIKVGRPSNIGQAQPII---DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDTTGKHKGYGFIEYEKAQSSQDAVSMNLFDLGGQYLRVGKAVTPPMPLLTPAT..`	314
5	-55.600	`[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)`	`ali follow..`	11	23	`..ILQLFSQIGPCKNCKMIMD-TAGNDPYCFVEFHEHRHAAAANGRKIMGKEVKVNWATTPSSQKKDTSNHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD----KGYSFVRFNSHESAAHAISVNGTTIEGHVVKCYWGKETLDMINPVQQQNPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQ------QGFNQTQSSAPWMGPNYGVQPPGQNGSMLPNQPSGYRVAGYETQ.........`	375
6	-54.100	`[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)`	`ali follow..`	15	7	`...........DIVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHS------------------KSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAM--ANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDDTGRSKGYGFITFSDSECARRALELNGFELAGRPMRVGHVTERLDGGTD.....`	332
7	-53.700	`[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)`	`ali follow..`	16	2	`................................................................................................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR-HGLVPFAFVRFEDPRDAEDAIYRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADV------QKDGVGMVEYLRKEDMEYALRLDDTKFRSHEGETSYIRVYPERSTSYGYSR`	194
8	-52.900	`[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)`	`ali follow..`	16	565	`................................................................................................................................................AVSSSNASSTPAPGSFAVQKAAPGTEDARTIFVSNLDFTTTEDEIRQAIEGVASIRFARKANSDLVHRGFAYVVMENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKF-------STTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCVSGDKLMLRERELEVALSNPPVKKDKSHGK..`	770
9	-51.500	`[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)`	`ali follow..`	16	1	`......................................................MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP-----------GMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPGLSRGCAFVTFTTRAMAQTAIKMHQAQTCSSPMVVKFADTQKDKEQKRMAQAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDQTNLSKCFGFVSYDNPVSAQAAIQMNGFQIGMKRLKVQLKRSKNDSK.......`	480
10	-50.400	`[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)`	`ali follow..`	14	2	`.................................................SGARRDNRRSNGRDDSSRVAKAENDRKPGRENRGGDEKRGNSNNAARSGGGGGGNRGGAERGIAPAQQPYDNNGGHRSGGGGGRSGGGGTSFNG---------AAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-----GKGFAFLRLDTRAHAESAKEIDGRIIHGRQVRVRFAVHG--------------------AAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAIRDKVFSPKPLICEVLEPRDEDDGLAERM.`	281
11	-50.100	`[R] KOG0110 RNA-binding protein (RRM superfamily)`	`ali follow..`	13	490	`................EILAKQFKTSKERILDTSDGGSSAAVRLALGETQEEEGVRLDAFDEPAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGRIVLP------PSGVTALIEYCDPLEARQAFKVIPKSEPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRFKSLGYGFIQFKKSSVAEHALKLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKGEDAHRGFGFVDYMSKAEAKRAFDLSASTLYGRRLVLEWSANDDNQDVEEL...`	875
12	-49.900	`[A] KOG4212 RNA-binding protein hnRNP-M`	`ali follow..`	18	1	`..................................................................................................................MAAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEVGEVTYVELLMDAGKSRGCAVVEFKMEESMKKAAELNKHSLSGRPLKVKEDPDGEHARRAMQKVMAALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISFNGQLLFDRPMHVKMDERALPKGDFFPP..`	291
13	-47.900	`[K] KOG4210 Nuclear localization sequence binding protein`	`ali follow..`	11	1	`.................MSETELSKEDAVTKKDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYN-------------------------------IDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKD--DLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKRMATFEDSGKCKGFAFIDFKNEEGSTNELKKSCRKIAGRPLRMEYGEDRSKRQVRKK...`	326
14	-47.100	`[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)`	`ali follow..`	13	2	`.....................ESNHKSGDGLSGTQKEAALRALVQRQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNN-----------------------YEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVADKTKNRGFAFVEYESHRAAAMARRLLPGRIQGHGIAVDWAEPEVEV---------DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEAMKLNGKVLDGSPIEVTLAKPVDKDSYVRYT..`	313
15	-46.900	`[A] KOG0131 Splicing factor 3b, subunit 4`	`ali follow..`	23	10	`.............................................................................................................................................................GANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDTNLHQNYGFIEYRSEEDADYAIKLNMIKLHGKPIRVNKASQD-------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDTGNSRGFGFISYDSFEASDAAIEMTGQYLSNRQITVSYAYKKDTKGERHGT..`	201
16	-46.900	`[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)`	`ali follow..`	11	73	`.................................................VPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVSTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDTGLSKGYAFCEYVDLSITDQSIALNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGPGCGKVFVEFNSVLDCQKAQQLTGRKFSDRVVVTSYFDPDKYHRRE.....`	415
17	-46.600	`[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B`	`ali follow..`	16	2	`....................................................................................................................................................................LTADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVALKT-PKLRGQAWVTFSEVTAAGHAVRMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI----DAKPGIAFVEYEDDVQASIAMQLQGFKITPQPMVISFAKK............`	232
18	-46.500	`[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins`	`ali follow..`	13	4	`..............................................................GTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNN---VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNITLPVDFGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRTTGHCVHMRGLPYRATENDIYNFFSPL-NPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYEHRY`	376
19	-46.400	`[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)`	`ali follow..`	18	1	`...................................................................................................................MYIKMATLANGQADNASLSTNGLGSSPGSA----GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDTGMHKGCAFLTYCERESALKAQSLHEQKTMNRPIQVKPADSESRGGSSC-----LRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINLHGSQTASSSLVVKFADTDKERTMRRMQ..`	242
20	-44.200	`[AR] KOG1365 RNA-binding protein Fusilli, contains RRM domain`	`ali follow..`	12	117	`....................YGNQEEDGMEQEEIEDDVAIARAILDMDDEEYQPAPILEDQEVGADGDNVVCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKRHRNFLLSRYIEVYKAGLDE---FMHVATGSSTEAMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGDFATMVKFHMVYNNQGHPSGEAFIQMINEQAASACAGVHNNFMSKRYIEVFQASAEELNLHHLVGQQ`	481
21	-44.000	`[A] KOG4209 Splicing factor RNPS1, SR protein superfamily`	`ali follow..`	16	1	`.........................................................................................MSDNDIIDDDVLNIEDMTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVG------HMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTNRPPFRGRGNVIVKYVYAGGFRPRGRGARRRPGFAPY.................................................................`	205
22	-43.000	`[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19`	`ali follow..`	11	1	`...............................................................................................MESRHFATALVFLASKGFVDILYWVYRFQASSMA---------------FCTKLGGHWKQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNTGRSRGYGFVNFISEDSANSAISMNGQELNGFNISVNVAKDWPSLPLSLDEENKMMSRSVWKDPFVDAFLMKKKNAALNRKIWSRR-STILPEYVDSAVRIYNGKTHVRCKTEGKVGHKFGEFAFTRKVK.....................`	238
23	-42.200	`[R] KOG4733 FOG: RRM domain`	`ali follow..`	12	3	`...................................................................................................KVWKQQMYPQYATYYYPQYLQAKQSLVPAH--------------PMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDTNKCKGYGFVDFDSPAAAQKAVSLKASGVQAQMAKQQEQDPT---------------------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGFNGKFIKTPPGVSAPTEPLLCKFADGGQKK`	230
24	-41.400	`[D] KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins`	`ali follow..`	15	37	`....SMFSSSLPTLFHEKLN--MTDSDSWLSFDESSPNLNKLVIGNSEKDSL--------------EDVEPDALEILLPEDENELLPGLIDELNFTGLPDELDDLEECDVCTGGGMELDVESQDNHAVDASGMQISDRGAANAFVPRKR-----PNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT---ACKSRGFVMISYYDIRAAHAAMRLQNTLLRKRTLDIHFSIPKENP----------SEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGE----IREIRETPNRRFHRFIEYYDVRDAETALKLNRSEIGGKCIKLELSRPGGARRLSVPSQS`	355
25	-41.000	`[A] KOG1190 Polypyrimidine tract-binding protein`	`ali follow..`	14	74	`.EVISLGLPFGKVTNLLML-----KGKNQAFIEMNTEEAANTMQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQA----LQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF---FQKDRKMALIQMGSVEEAVQALDLHNHDLENHHLRVSFSKST...........`	549
26	-40.700	`[R] KOG0226 RNA-binding proteins`	`ali follow..`	9	77	`.......................................................................................................................................................TIAVSPFINPALGRLPTMPPVPPSIFMPPQLRAAPIMFPPRVLGIPAPATIEGAPAETPAVNAIPQELLRTQALQSDIDMNFKKQTDPFKKKIKEQQAKKKGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRERTNKSKGYGFVSFRDSEDYVRAMEMDGKYVGNRPIKLRKSAWKERNIDVIKQKR`	293
27	-40.300	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`	`ali follow..`	14	2	`............................................................................................................................................................................VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIM------KNGFGFVDFQDQRDADDAVHLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEP---TYSEAHKRNVNQAIVCFTSHDDLRDAMNLQGEDLNGRKLKCTDETRDRSRSRSPRR..`	196
28	-37.400	`[K] KOG1548 Transcription elongation factor TAT-SF1`	`ali follow..`	12	19	`...............................................................................SEGNELIYIDEEQTWKDYDPNSLKMNKAGST--GAEVSDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKIKIYRTDGTPKGDALIVFFRSESVELAEQFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKNKIVVLKHI-LIDLKDDITEEAEKCGRVTNVVL---YDKEPDGVVTVRFSNNEEAEACVRMQGRYFDGRVVEASIYDGKVRFQKSGKH..`	344
29	-37.300	`[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)`	`ali follow..`	13	85	`...................................................................................................................................................GDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKKGDTSKCPYKDLAAPTDVFIDKPTGESSTMSAAPGTGKAAPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDKTGVSRGFGFVNFVSREDAQRAINLNGYGYDNLILRVEWATPRPT.........`	294
30	-36.200	`[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)`	`ali follow..`	18	13	`...........................................................................................................................................................QHFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKKTPCGFCFVEYYVRSEAEAAMRVNGTRLDDRLIRVDWDAGFVEGRQ--------------YGRGKTGGQVRDEYRTDYDAGRGGYGKLLSQKIAPNTDNR..................................................`	154
31	-35.500	`[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)`	`ali follow..`	10	2	`.................................................EKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPT---EYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQ----------SSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARELHGTVVEGRKIEVNNATARVMTNKKMVTPYANG...............................................................................................`	203
32	-35.000	`[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1`	`ali follow..`	17	30	`.............................................................................................................................................................LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDTKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK----------RTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPVQLN..`	221
33	-33.100	`[R] KOG4454 RNA binding protein (RRM superfamily)`	`ali follow..`	26	2	`.................................................................................................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIEMNGVRLFNQELQVKPRNGTNQEEL........................................................................................................`	95
34	-32.900	`[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	19	2	`...............................................................................................................................................................NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV-GNTPETRGTAFVVYEDIFDAKNACDLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAK........................................................................................`	112
35	-32.700	`[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15`	`ali follow..`	20	2	`.......................................................................................................................................................................SMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDTGSGKGYGFCEFFDSETTAMAVRLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNA.......................................................................................`	108
36	-32.300	`[A] KOG4207 Predicted splicing factor, SR protein superfamily`	`ali follow..`	17	2	`................................................................................................................................................................SCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLETKAPRGFAFVRFHDRSDAQDAEAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYG.......................................................................................`	115
37	-32.200	`[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)`	`ali follow..`	12	19	`......................................................................................................................GDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDTGFSKGYALVEYETHKQALAAKELNGAEIMGQTIQVDWCFVKGPKRVK.......................................................................................................`	158
38	-30.700	`[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)`	`ali follow..`	20	2	`............................................................................................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP---PGYAFLDFEDSRDARDAIRVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKC.......................................................................................`	98
39	-29.500	`[R] COG0724 RNA-binding proteins (RRM domain)`	`ali follow..`	21	171	`........................................................................................................................................................AGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNTGKSRGLAFVTFSSEEVAEQALRLDGRGYMNLILRVEWSKPKVKE..........................................................................................................`	274
40	-29.200	`[J] KOG0129 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	16	438	`...........................................................................................................................................................SPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDLKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQL....`	649
41	-28.700	`[R] KOG4307 RNA binding protein RBM12/SWAN`	`ali follow..`	13	460	`.AALEAFIHPTTLSSVKTVFGPGGIHMHTRLDSIADYATMMRRNGEQGIKIQQSDKKSFDTAIDGIPIPSVSMVPSKEQRSHEDDDKK------------------------------SRRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSRSPRRREEHTDPTRWCVQVTNVPFRMKDEELLEWFSEKVRPAKLRTFYSDGNASDRWVAEFSSESLMKRSFGIRTL-CTGRTLRLRYIDNAKADEILKIEDVYGEGKRQMNEELSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRGDDGVMTGECMLACQNQENARRASDLDGQKLRNSVISV.................`	945
42	-28.600	`[AR] KOG0109 RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains`	`ali follow..`	10	119	`SAVARLCPRGCLRGAVPFLPRPRGRGSGLATPRTLSGKWLTDEGRASSGCLNPNRCKPAPHAEGVGAGSRGGARAQSVLSPSGDSREGDLLQFASSERARLTPMIPRPRLLR------IHGAFRTKRFSVRDKEDQWTVSVQRQLVYRPSTEAGHNNKELPPPLPPRGAC-PDDEAVHQKPAPGHRAGDPLSFQAVGKVLECDII------KNYGFVHIEDKTAAEDTIHLHHYKLHGVNINVEASKNKSKA----------------STKLHVGNISPTCTNQELQAKFEKYGPVIECDIV-------KDYVLIHFIHMECCPQARRTAPGMGDQCGCYQCKKEGHWSKECPVDR..`	459
43	-28.300	`[R] KOG4208 Nucleolar RNA-binding protein NIFK`	`ali follow..`	14	2	`.......................................................................................................................................................................AAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKTGNSKGYAFVEFESEDVAKIVTTMNSYLFGERLLECHFMPPEKKMES........................................................................................................`	90
44	-27.300	`[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains`	`ali follow..`	15	197	`.................................................................................................................................................RNSRRDDRRSNLSNNDRYSDWNPGVPSNKLAILNMPNDVDNTKITLSLGKCGYLVRTMTKFDTKQIRTFAFVEFSNRETAEQWMTDYEGWLDGRTLAVEYAKGDPAAGSGNKGDDAHMVGMTPCDTLLIRGLPDGINNSLIFDSLGALVCLSSISMI--KLSESKRFAYLQMKSADEAKMLLNLSPIRIKDKDVQVSWCRDSMSK........`	444
45	-26.300	`[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)`	`ali follow..`	11	4	`........................................................................................................................................................QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP------------YAVIPNMPDLLPRTLEMCRVLEVHLLEIIRINHFHITTSKELSILMVTAYGPEYMYSQSQGLYSPYMGQQYLQVYGVPG...........`	189
46	-26.300	`[D] KOG2186 Cell growth-regulating nucleolar protein`	`ali follow..`	17	384	`....................................................................................................................................................YKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKPGKAGKE......................................................................................................`	493
47	-25.400	`[R] KOG1457 RNA binding protein (contains RRM repeats)`	`ali follow..`	16	77	`............................................................................................................................................................TVSVLFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNLNGIRFDPQTLRLEFAKANTKMAKSKLMATPNPSNA............................................................................................`	188
48	-24.500	`[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	19	29	`.....................................................................................................................................................................HSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDTGKSKGFCFLCYEDQRSTILAVNFNGIKIKGRTIRVDHVSNYRAPK.........................................................................................................`	119
49	-23.900	`[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	18	216	`..............................................................................................................................................................ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPR----QQCAFVQYTKRNAAELAAEFNKLVIQGRKVSIKWAHSQAKQGTAAKTDRRFDLA.............................................................................................`	320
50	-21.700	`[A] KOG0533 RRM motif-containing protein`	`ali follow..`	15	54	`........................................................................................................................................................KDLDAVQNHGISSRGNDSKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNEGDSLGTGDISLTKRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRG.......................................................................................`	172
51	-20.200	`[A] KOG4676 Splicing factor, arginine/serine-rich`	`ali follow..`	21	25	`....................................................................................................................................................................GGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE..............................................................................................................`	112
52	-20.000	`[R] KOG2135 Proteins containing the RNA recognition motif`	`ali follow..`	13	345	`.......................................................................................................................................................NIRGRGGFARGGFTGAINRDNCTLQVAKIPPENTIAKLNEHFATFGTVDNIQVRYNGEIDS--ALVTYASKFDAGKAYKSPTPVLNNRFIKVFWHNPGGEGSENATGKPSSPTSSKMSSVVIVRGVTDE-LVTDLMAHMEKFGEVFDHSVKADDDGLIT--AVFPFRKTGDALKAMA-DGKVLNGVDLEMELKTERIEEIPSTDT..`	693
53	-18.900	`[R] KOG0151 Predicted splicing regulator, contains RRM, SWAP and RPR domains`	`ali follow..`	11	3	`................KDEFFLDHPGRKHRSRNTEKKKKPRRRERRMKQLVCIKSRFKGIMLQLRLLLEVTINPNDNKLKPDSQGMFPPFVKDQRIRDEERSKEMEKGKTRNIDFVEELKREQEIRERRNQDRENSRDHNSDNTSSSRFDELPDYFDPSGRLGSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMEEKRRERHCGFVAFMNRADGEAAKKMQGIIVYEYELKIGWGKVVFLPSQA.......................................................................................................`	259
54	-18.200	`[K] KOG2068 MOT2 transcription factor`	`ali follow..`	21	82	`.................................................................................................................................................DRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTAPNNTCSVYITYGKEEEAIRCIQVHGFILDGKALKACFGTTK.............................................................................................................`	196
55	-17.700	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`	`ali follow..`	12	3	`.............................................................................................................................SEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPERGQRFSEGWVEFAKKSVAKRADMLNGEQIGGKKKS....................................................................................................................`	143
56	-17.700	`[R] KOG1995 Conserved Zn-finger protein`	`ali follow..`	16	254	`..................................................................................................................................................QEASYEDAATEKVKQCDADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGNIKIYTDEGNYKGDACLAYEDPSAAHSAGGFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNM...........................................................................................`	390
57	-17.500	`[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit`	`ali follow..`	11	39	`......................................................................................................................PTESAASGGGGGGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRGQSKGFSVISLGSESSLRAVLDLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGP.......................................................................................`	196
58	-16.900	`[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains`	`ali follow..`	13	223	`......................................................................................................................QDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGFGFVTFASAEAVKLVLQESAIRIGNRRVSIEEKRGNNDNGRPA......................................................................................................`	365
59	-16.800	`[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1`	`ali follow..`	13	2	`...................................................................................................................................................................EEVDLQDLPSATIACHLDPRVFVDGFESLFRTYDKDITFQYF----KSFKRVRINFSNPFSAADARLLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQ..............................................................................................`	104
60	-16.500	`[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)`	`ali follow..`	12	259	`...................DLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDS-------EDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNSPGARCYGFVTMSTAEEATKCINLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNS.......................................................................................`	507
61	-16.000	`[A] KOG1996 mRNA splicing factor`	`ali follow..`	15	195	`............................................................................................................................................................EEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGL---KHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTECPTKVVLLRNMAGEVDEDETKEECEKYGKVGKCVIFEIPGAPDDEAVFLEFERVESAIKAVVLNGRYFGGRVVKAC................`	389
62	-15.700	`[A] KOG4213 RNA-binding protein La`	`ali follow..`	11	19	`...................................................................................HQIEYYFGDFNLPRDKFLKEQIKLDEG----IKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVEAKLRAKQE---GDLDDQTCREDLHILFSNHGEI--------DFVRGAKEGIILFKEKAKEALGKA-GNLQLRNKEVTWEVLEGEVEKE.......`	313
63	-15.200	`[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins`	`ali follow..`	20	34	`..................................................................................................................................................................SRLHNRPTISPTLLLSNMHFEDFFEDLFEELGKFGEIESLNICDNADHMIGNVYVQFKEEDQAAAALALQGRFYSGRPIIADFSPVTD............................................................................................................`	148
64	-14.200	`[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)`	`ali follow..`	16	102	`............................................................................................................................................................................RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDSGKPKGYAFIEYEHERDMHAAYHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGN.......................................................................................`	203
65	-12.700	`[A] KOG4008 rRNA processing protein RRP7`	`ali follow..`	10	39	`.....................................................................................................................................................................KKDPSKENSIIVSNIPAFVGEGVVLAIIDQFASFEVEESFVQRSNGQLTMSITFDKPEAVIQTLALSEEQIQEMADTYVERYDTEQTEARKEAKRKYSEPDEDGWITVTKAKKAAKSVKLKKE-------DVPLIGGLNNKKKKVDLAYYTFQIKKNRQEKAQELLKKFEEDRKRITQLKQARN.........`	257
66	-12.300	`[R] KOG2295 C2H2 Zn-finger protein`	`ali follow..`	11	359	`..........KQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKS-------EISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRFSGYLRVAI-ADPLVERRWGWITFMRDVNIKEICGLNNQRLRDCEMGAIVNRDLSRRANGITAHKQVVRSDIKLCAKIALNLDEK..............................................................................`	628
67	-12.100	`[R] KOG4198 RNA-binding Ran Zn-finger protein and related proteins`	`ali follow..`	19	226	`..........................................................................................................................................................TQPINCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGHPVALWTLKTPYKSTGTGFVLFASHEDAADALAFNGYCLGDRMLEIIPSSTKVLDKASDILIPFPSSKNRPRPGDWFSNFQRRTS............................................................................`	362
68	-11.300	`[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)`	`ali follow..`	17	45	`................................................................................................................................................................QDDQSEFDTGFGNIIVVDHLPFEKLEGVVKKIYNQLGVIKENGL-PDTKMTLGYCFIEFNTPQEAQNAKESHGYKLDKS.......................................................................................................................`	134
69	-10.200	`[R] KOG1855 Predicted RNA-binding protein`	`ali follow..`	14	263	`........................................................................................................................................................QGPNEIDTLDPSLIPSEELAAEI-TDAVEFYFSNESIKDAFNKEGFV-SLKLVSSFKRVRQLT----REWKVVGDAVRRKSRKI-----ELNDVGTKVRRIEP-----PSFDETMPSRTIVACDLPLDLTIEKVSDLFSPCGE-IALIRILKPGMAIKECALVEYLESSSARDARHL.............................`	448
70	-9.650	`[K] COG5175 Transcriptional repressor`	`ali follow..`	10	97	`....................................................................................................................................KMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYEEVEKYFGQYGKINKIVVNRKTPHSNN-VYITFGSKDDAARCIAVDGTYMDGRLIKAAYGTTK------------RGLPCPNPNCMFLHEPADSFNKRELHN......................................................................`	269

FFAS is supported by the NIH grant R01-GM087218-01

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